Table 2. Occurrences of the putative MCA1 binding site in available chloroplast genome of Chlorophytes and Streptophyte algae.
| Organism | Loc.a | Occ.b | |||
|---|---|---|---|---|---|
| core chlorophytes |
Ulvophyceae |
Bryopsidales |
Bryopsis hypnoides (NC_013359) |
57 |
1 |
| Ulotrichales |
Pseudendoclonium akinetum (NC_008114) |
62 |
1 |
||
| Oltmannsiellopsidales |
Oltmannsiellopsis viridis (NC_008099) |
37 |
1 |
||
| Chlorophyceae |
Oedogonales |
Oedogonium cardiacum (NC_011031) |
no petA |
0 |
|
| Chaetophorales |
Stigeoclonium helveticum (NC_008372) |
no petA |
35 |
||
|
Schizomeris leibleinii (NC_015645) |
no petA |
6 |
|||
| Chaetopeptidales |
Floydiella terrestris (NC_014346) |
no petA |
19 |
||
| Chlamydomonales |
Chlamydomonas reinhardtii (NC_005353) |
260 |
2 |
||
|
Chlamydomonas raudensis (AY039799) |
207 |
na |
|||
|
Gonium pectoral (NC_020438) |
390 |
1 |
|||
|
Pleodorina starrii (NC_021109) |
494 |
1 |
|||
|
Volvox carterii (GU084820) |
3207 |
1 |
|||
|
Dunialliela salina (NC_016732) |
none 352 |
17 CAGAAGAAAA (5) |
|||
|
Haematococcus pluvialis |
32 |
na |
|||
| Sphaeroplerales |
Scenedesmus obliquus (NC_008101) |
119 |
11 |
||
| Trebouxiophyceae |
Chlorellales |
Chlorella variabilis (NC_015359) |
62 |
3 |
|
|
Chlorella vulgaris (NC_001865) |
360 |
5 |
|||
|
Parachlorella kessleri (NC_012978) |
40 |
3 |
|||
|
Pedinomonas minor (NC_016733) |
none 139 |
1 AGGAGAAAA (1) |
|||
| Oocystaceae |
Oocystis solitaria (FJ968739) |
26 |
1 |
||
| |
Helicosporidium sp. (NC_008100) |
no petA |
|
||
| Cnetocladales |
Leptosira terrestris (NC_009681) |
none 44 |
0 GAGAAGACAA (1) |
||
| Trebouxiales |
Trebouxia aggregata (EU123973) |
38 |
na |
||
|
Trebouxiophyceae sp. MX-AZ01 (NC_018569) |
none 43 |
0 GAGAAGAGAA (1) |
|||
|
Parietochloris incisa |
150 |
na |
|||
| |
Coccomyxa sp. C-169 (NC_015084) |
58 |
1 |
||
| Prasinophytes |
|
Pyraminonadales |
Pyramimonas parkeae (NC_012099) |
none |
2 |
| Mamiellophyceae |
Mamiellales |
Micromonas pusilla CCMP1545 (NC_012568) |
no petA |
0 |
|
|
Micromonas pusilla RCC299 (NC_012575) |
none |
0 |
|||
|
Ostreococcus tauri (NC_008289) |
none |
0 |
|||
| Monomastigales |
Monomastix sp. OKE-1 (NC_012101) |
none |
4 |
||
| |
Pycnococcaceae |
Pycnococcus provasolii (NC_012097) |
none 42 |
0 AGAAGAAAA (6) |
|
| Nephroselmidophyceae |
Nephroselmis olivacea (NC_000927) |
none 37 |
3 CAGAAGAAAA (2) |
||
| Charophytes | Chlorokybophyceae |
|
Chlorokybus atmophyticus (NC_008822) |
1693c |
1 |
| Mesostigmatophyceae |
|
Mesostigma viride (NC_002186) |
none |
1 |
|
| Zygnematophycee | Staurastrum punctulatum (NC_008116) | none | 5 |
a Distance (in nucleotide) between the first nucleotide of the target sequence (GAGAAGAAAA) and the A of the petA initiation codon. ?None? indicates that the target sequence was not found upstream of petA within 5 kb. When a slightly divergent sequence was found upstream of the petA gene, its distance to the initiation codon is indicated in the lower line. bNumber of occurrence of the target sequence in the whole chloroplast genome (na chloroplast genome not available). When a slightly divergent sequence was found upstream of the petA gene, it is shown in the lower line with its number of occurrences indicated between parentheses. cIn Chlorokybus atmophyticus, the target sequence, present only once in the chloroplast genome is located upstream of the cemA gene, the gene immediately upstream of the petA gene.