Table 2.
Gene | Rs number | Location | Variant | Base change | Genotyping method |
---|---|---|---|---|---|
UGT1A8 | rs1042597 | Exonic | UGT1A8*2 | 518 C>G | SBE-DHPLC |
rs1042605 | Exonic | UGT1A8*1a | 765 A >G | SBE-DHPLC | |
rs1551285 | Intronic | – | C> A | SBE-DHPLC | |
rs6431558 | Intronic | – | T >C | SBE-DHPLC | |
UGT1A4 | rs6755571 | Exonic | UGT1A4*2 | 70 C> A | SBE-DHPLC |
rs12468274a | Exonic | – | 448 T>C | SBE-DHPLC | |
rs2011404 | Exonic | – | 471 T>C | SBE-DHPLC | |
rs871514 | Intronic | – | T >C | PCR-sequencing | |
rs13401281 | Intronic | – | T >G | PCR-sequencing | |
UGT1A1 | rs4124874 | 5′-UTR | – | – 3279 G> T | SBE-DHPLC [22] |
rs10929302 | 5′-UTR | – | – 3156 G>A | SBE-DHPLC [22] | |
rs4624373 | 5′-UTR | – | – 2951 A >G | SBE-DHPLC | |
rs3755319 | 5′-UTR | – | – 1352 A >C | SBE-DHPLC | |
rs8175347 | Promoter | UGT1A1*28 | (TA)5, 6, 7, 8 | PCR-sizing (GeneScan) [22] | |
UGT2B7 | rs62298861 | Intronic | – | Int1 + 985 A >G | SBE-DHPLC [23] |
rs7668258 | Promoter | – | – 161 T>C | SBE-DHPLC [23] | |
SULT1A1 | rs3760091b | Promoter | – | – 624 G>C | Hebbring et al. [11] |
rs750155 | Promoter | – | – 396 G> A | Hebbring et al. [11] | |
rs9282861 | Exonic | SULT1A1*2 | 638 G> A | Hebbring et al. [11] | |
rs1801030 | Exonic | SULT1A1*3 | 667 A >G | Hebbring et al. [11] | |
Copy number (2, 3, 4, 5) | – | – | Copy number (2, 3, 4, 5) | Hebbring et al. [11] |
LD, linkage disequilibrium; SBE-DHPLC, single base extension-denaturing high-performance liquid chromatography; SULT, sulfotransferase; UGT, UD-Pglucuronosyltransferase; 5′-UTR, 5′-untranslated region.
In LD with UGT1A4*3.
In LD with SULT1A1*2.