Table 1.
List of LoDs on the mouse X chromosome
| LoD no. | Position | Length (bp) | Segment number on HELP array | Methylation |
Gene families | Description | Number of duplications |
Human CTA genes | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Brain M-value/testis M-value | CGI | Seg Dups | Total | Within LoD | Outside LoD on chrX | |||||||
| 1 | chrX:3035387-4561626 | 1 526 239 | 12 | −2.52 | 1344 | Gmcl1l | Germ cell-less protein-like 1 | 11 | 8 | 3 | ||
| 2 | chrX:7857031-7924410 | 67 379 | 5 | −1.924 | 88 | Ssx9 | Synovial sarcoma, X breakpoint 9 | 11 | 4 | 7 | CTA | |
| 3 | chrX:8116622-8236784 | 120 162 | 19 | −1.82 | 45 | Fthl17 | Ferritin, heavy polypeptide-like 17 | 7 | 6 | 1 | CTA | |
| 4 | chrX:22991291-32117922 | 9 126 631 | 100 | −1.4745 | 10 697 | Xmr | XMR protein (Xlr-related, meiosis regulated) | 32 | 28 | 4 | ||
| Gmcl1l | Germ cell-less homologue 1 (Drosophila)-like | 11 | 2 | 9 | ||||||||
| LOC236749 | Hypothetical protein LOC236749 | 1 | 1 | 0 | ||||||||
| 5 | chrX:50380769-52184422 | 1 803 653 | 48 | −1.75 | 1 | 1971 | Similar to Xmr protein | Adult male testis cDNA, RIKEN full-length enriched library, clone: 4930527E24 product: weakly similar to XMR PROTEIN | 30 | 16 | 14 | |
| 6 | chrX:57970833-58090999 | 120 166 | 5 | −2.14 | 23 | Ldoc1 | Leucine zipper, down-regulated in cancer 1 | 1 | 1 | 0 | ||
| 7 | chrX:58775958-58815172 | 39 214 | 13 | −3.45 | 10 | a1700019B21Rik | Mus musculus adult male testis cDNA, M. musculus RIKEN cDNA 1700019B21 gene (1700019B21Rik), transcript variant 1, non-coding RNA | 1 | 1 | 0 | ||
| 8 | chrX:72448732-72544743 | 96 011 | 4 | −1.59 | 67 | LOC238829 | Hypothetical protein LOC238829 (AK133378—M. musculus adult male testis cDNA, RIKEN full-length enriched library, clone: 4933402E19 product: hypothetical protein, full insert sequence) | 4 | 1 | 3 | ||
| 9 | chrX:84663998-86056286 | 1 392 288 | 23 | −1.2207 | 334 | Pet2 | Plasmacytoma expressed transcript 2 | 1 | 1 | 0 | ||
| 4932429P05Rik | M. musculus RIKEN cDNA 4932429P05 gene (4932429P05Rik), mRNA. (M. musculus adult male testis cDNA) SMEK homologue 3, putative | 1 | 1 | 0 | ||||||||
| 10 | chrX:87564706-87579103 | 14 397 | 20 | −3.70 | 1 | (up site of Mageb1, Mageb2) | ||||||
| 11 | chrX:87598220-88271067 | 672 847 | 15 | −1.0483 | 43 | Mageb5 | Melanoma antigen, family B, 5 | 2 | 2 | 0 | CTA | |
| Mageb1 | Melanoma antigen, family B, 1 | 2 | 1 | 1 | CTA | |||||||
| 12 | chrX:88271564-88285701 | 14 137 | 21 | −3.76 | 1 | (up site of Mageb1,Mageb2) | ||||||
| 13 | chrX:103040719-103447968 | 407 249 | 10 | −1.186 | 158 | A630033H20Rik | Hypothetical protein LOC213438 (product: similar to putative purinergic receptor P2Y10) | 1 | 1 | 0 | ||
| Gpr23 | G protein-coupled receptor 23 | 1 | 1 | 0 | ||||||||
| P2ry10 | Purinergic receptor P2Y, G-protein coupled 10 | 1 | 1 | 0 | ||||||||
| Zcchc5 | Zinc finger, CCHC domain containing 5 | 1 | 1 | 0 | ||||||||
| 14 | chrX:142924085-145405975 | 2 481 890 | 112 | −1.0089 | 2 | 1666 | Ott | Ovary testis transcribed | 17 | 16 | 1 | CTA |
| 15 | chrX:149333243-150403389 | 1 070 146 | 41 | −1.4149 | 211 | Magea | Melanoma antigen family A 2, 3, 5, 6, 8 | 7 | 5 | 2 | CTA | |
| Samt4 | M. musculus spermatogenesis associated multi-pass transmembrane protein 4 (Samt4), mRNA (hypothetical protein LOC75185) | 1 | 1 | 0 | ||||||||
| 16 | chrX:160673416-161229042 | 555 626 | 13 | −1.13 | 274 | |||||||
aNon-coding RNA.