Table 1.

Summary of polymorphisms

	Effectiveness	Transformation-induced		Mutagenesis-induced
		SNP	DIP	SNP	DIP
No polymorphism sites	Yes	355 561 133	355 657 126	347 347 999	347 436 870
Polymorphism sites		93 110	6953	67 721	6903
Non-unique	Yes	91 035	6290	58 316	3042
Not covered in other lines	No	1908	635	8466	714
Unique	Yes	167	28	939	3147
Covered sites		355 652 335	355 677 204	347 407 254	347 446 813
Covered sites (%)		95.3	95.3	93.1	93.1

Effectiveness indicates whether the sites were used for polymorphism calling and comparison.

Covered sites were the sum of effective sites.