Table 3.
Differentially expressed genes between a123 and OSCR11
| RAP-ID | Average of RPKM |
Fold change | Annotation | |
|---|---|---|---|---|
| a123 | OSCR11 | |||
| Os03g0115800 | 0.8 | 155.0 | 7.5 | Conserved hypothetical protein |
| Os08g0107400 | 1.0 | 72.4 | 6.1 | Similar to GDP-mannose transporterb |
| Os10g0400200 | 132.3 | 2293.5 | 4.1 | GluA-2b |
| Os09g0538000 | 0.0 | 8.1 | N/A | Ribonuclease T2 family protein (OsRNS5) |
| Os01g0537250 | 0.5 | 115.1 | 8.0 | Protein of unknown function DUF3778 domain-containing protein |
| Os09g0512700 | 9.1 | 40.1 | 2.1 | Armadillo-like helical domain-containing protein (Fes1-like)a |
| Os01g0917100 | 7.5 | 0.3 | −4.7 | Conserved hypothetical protein |
| Os04g0641101 | 150.6 | 48.1 | −1.7 | Non-protein coding transcript |
| Os06g0593100 | 82.3 | 219.7 | 1.3 | Similar to UDP-galactose/UDP-glucose transportera |
| Os01g0293000 | 0.0 | 4.3 | N/A | Similar to S-adenosylmethionine synthetase 1 (EC 2.5.1.6) |
| Os06g0622700 | 63.8 | 160.7 | 1.3 | OsbZIP50a |
| Os01g0880800 | 81.9 | 32.2 | −1.4 | Acyl-[acyl-carrier-protein] desaturase |
| Os09g0451500 | 109.7 | 274.3 | 1.3 | OsPDI2;3a |
| Os03g0182800 | 30.4 | 12.0 | −1.4 | OsERF3 |
| Os03g0293000 | 19.4 | 48.9 | 1.3 | Similar to DnaJ domain-containing proteina |
| Os12g0504900 | 15.0 | 1.2 | −3.7 | Glucoamylasea |
| Os10g0207500 | 0.0 | 5.1 | N/A | Similar to TPD1a |
| Os09g0491100 | 0.0 | 2.0 | N/A | Similar to beta-primeverosidase (EC 3.2.1.149)a |
| Os07g0679400 | 4.2 | 0.8 | −2.3 | Conserved hypothetical protein |
| Os01g0693600 | 0.1 | 3.4 | 4.8 | Conserved hypothetical protein |
| Os02g0710900 | 12.1 | 26.8 | 1.1 | Heat shock protein Hsp70 family proteina |
| Os04g0498900 | 4.2 | 0.5 | −3.0 | Conserved hypothetical protein |
| Os05g0156500 | 65.9 | 145.2 | 1.1 | Similar to Apobec-1-binding protein 2 (ERdj3B-like)a |
| Os09g0451000 | 3.1 | 17.0 | 2.3 | OsACO1 |
| Os08g0142900 | 64.6 | 20.6 | −1.8 | Conserved hypothetical protein |
| Os01g0149200 | 5.7 | 13.3 | 1.1 | Similar to Metallothionein-like protein type 2 |
| Os02g0565200 | 50.3 | 106.2 | 1.0 | Microsomal signal peptidase 25-kDa subunit family proteina |
| Os06g0716700 | 61.9 | 129.8 | 1.0 | Similar to heat shock protein 90a |
Fold changes are represented as log2 phase (OSCR11 to a123).
Expression levels are normalized to Reads Per Kilobase of exon per Million mapped reads (RPKM).
N/A in Fold change indicating RPKM in a line was >0, but the other was 0.
aGenes associated with ER stress.
bGenes directly related to integrated T-DNA.