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. Author manuscript; available in PMC: 2014 Aug 6.
Published in final edited form as: Biochemistry. 2013 Jul 22;52(31):10.1021/bi400779r. doi: 10.1021/bi400779r

Table 3.

Frequency of Dinucleotide Sequence Appearance Within the 5′-Arm of a Hairpin DNA between A5 and A19, and Analysis of Frequency of Cleavage at Each Dinucleotide

5′-XX-3′ Hairpin DNA

1 2 3 4 5 6 7 8 9 10 Occurrences Cleavages Percent cleaved
AA 2 2 3 2 4 5 3 2 3 2 28 11 39%
AC 1 1 1 1 1 5 3 60%
AG 1 1 2 1 5 0 0%
AT 4 2 2 3 3 2 2 2 2 3 25 16 64%
CA 1 1 1 1 1 5 1 20%
CC 1 1 2 1 50%
CG 2 2 1 1 6 0 0%
CT 2 1 3 1 33%
GA 2 1 1 3 1 1 9 9 100%
GC 1 2 1 4 4 100%
GG 2 1 2 5 1 20%
GT 1 1 1 2 5 5 100%
TA 2 1 2 2 3 3 2 3 2 1 21 6 29%
TC 1 1 1 1 1 5 0 0%
TG 1 1 1 1 1 1 1 7 0 0%
TT 1 1 2 1 1 1 2 1 3 2 15 3 20%