Table 5.
Frequency of Dinucleotide Sequence Appear Once within the 3′-Arm of a Hairpin DNA between T46 and T61, and Analysis of Frequency of Cleavage at Each Dinucleotide
| 5′-XX-3′ | Hairpin DNA | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | occurrences | cleavages | percent cleaved | |
| AA | 1 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 3 | 2 | 15 | 11 | 73% |
| AC | 1 | 1 | 1 | 2 | 5 | 1 | 20% | ||||||
| AG | 2 | 1 | 3 | 0 | 0% | ||||||||
| AT | 4 | 2 | 2 | 3 | 4 | 2 | 2 | 2 | 2 | 3 | 26 | 21 | 81% |
| CA | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 7 | 0 | 0% | |||
| CC | 2 | 1 | 2 | 5 | 0 | 0% | |||||||
| CG | 2 | 2 | 1 | 1 | 6 | 0 | 0% | ||||||
| CT | 1 | 1 | 2 | 1 | 5 | 4 | 80% | ||||||
| GA | 1 | 1 | 1 | 1 | 1 | 5 | 5 | 100% | |||||
| GC | 1 | 2 | 1 | 5 | 3 | 60% | |||||||
| GG | 1 | 1 | 2 | 1 | 50% | ||||||||
| GT | 1 | 1 | 1 | 1 | 1 | 5 | 5 | 100% | |||||
| TA | 2 | 1 | 2 | 2 | 3 | 3 | 2 | 3 | 2 | 1 | 21 | 4 | 19% |
| TC | 2 | 1 | 1 | 3 | 1 | 1 | 9 | 1 | 11% | ||||
| TG | 1 | 1 | 1 | 1 | 1 | 5 | 1 | 20% | |||||
| TT | 3 | 3 | 4 | 3 | 4 | 6 | 4 | 3 | 4 | 3 | 37 | 15 | 41% |