Table 1. Distribution of polymorphic sites and single-nucleotide polymorphism (SNP) for Brazilian (BRE) and Guadeloupean (GH2) strains of Schistosoma mansoni used in this study.

	BRE	GH2
1 - Total number of polymorphic sites	464,746	672,467
1.1 - Polybase substitution (% of total polymorphic sites)	1,044 (0.2%)	1,412 (0.2%)
2 - Total SNPs located on chromosomes (autosomes + ZW)	708,898 (568,046+140,852)
2.1 - Shared SNPs (% of total SNP)	65,490 (9.2%)
2.1.1 - Rare (% of total SNP - % of total shared)	9,744 (1.4%–20.5%)
2.1.2 - Frequent: (% of total SNP - % of total shared)	55,746 (7.8%–79.5%)
2.1.2.1 - Fixed (% of total SNP - % of total shared)	46,440 (6.6%–70.9%)
2.2 - Private SNPs (% of total SNP)	253,321 (35.8%)	390,087 (55.0%)
2.2.1 - Rare (% of total SNP - % of total private)	173,336 (24.5%–68.4%)	283,456 (40.0%–72.7%)
2.2.2 - Frequent: (% of total SNP - % of total private)	79,985 (11.3%–31.6%)	106,631 (15.0%–27.3%)
2.2.2.1 - Fixed (% of total SNP - % of total private)	69,620 (9.8%–27.5%)	94,666 (13.4%–24.3%)

AAF = alternative allele frequency. Rare SNP correspond to 0<AAF < = 0.2, frequent correspond to AAF>0.2 and fixed correspond to AAF = 1.