Table III.
Pathway names | Classification | Genes |
---|---|---|
Upregulated pathways | ||
Cytokine-cytokine receptor interaction | Signaling molecules and interaction | 50 |
Chemokine signaling pathway | Immune system | 42 |
Antigen processing and presentation | Immune system | 30 |
Jak-STAT signaling pathway | Signal transduction | 30 |
Natural killer cell mediated cytotoxicity | Immune system | 33 |
Type I diabetes mellitus | Metabolic diseases | 25 |
Asthma | Immune system diseases | 11 |
Autoimmune thyroid disease | Immune system diseases | 18 |
Systemic lupus erythematosus | Immune system diseases | 44 |
Allograft rejection | Immune system diseases | 18 |
Graft-versus-host disease | Immune system diseases | 15 |
Primary immunodeficiency | Immune system diseases | 11 |
Downregulated pathways | ||
Citrate cycle (TCA cycle) | Carbohydrate metabolism | 20 |
Fatty acid metabolism | Lipid metabolism | 34 |
Oxidative phosphorylation | Energy metabolism | 28 |
Alanine, aspartate and glutamate metabolism | Amino acid metabolism | 17 |
Glycine, serine and threonine metabolism | Amino acid metabolism | 22 |
Valine, leucine and isoleucine degradation | Amino acid metabolism | 31 |
Arginine and proline metabolism | Amino acid metabolism | 29 |
Tyrosine metabolism | Amino acid metabolism | 14 |
Tryptophan metabolism | Amino acid metabolism | 20 |
β-alanine metabolism | Metabolism of other amino acids | 15 |
Selenoamino acid metabolism | Metabolism of other amino acids | 15 |
Pyruvate metabolism | Carbohydrate metabolism | 20 |
Propanoate metabolism | Carbohydrate metabolism | 21 |
Butanoate metabolism | Carbohydrate metabolism | 23 |
Retinol metabolism | Metabolism of cofactors and vitamins | 17 |
Cardiac muscle contraction | Circulatory system | 10 |
Tight junction | Cell communication | 26 |
Genes: Number of common genes included in the pathway.