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. 2013 Oct 30;288(50):35714–35725. doi: 10.1074/jbc.M113.510461

TABLE 2.

Ring tilts of PCB from x-ray crystallography and QM/MM calculations

Cph2 refers to the crystal structure of SynCph2(1–2). The planar geometries relate to a modified SynCph2(1–2) structure, where the chromophore was substituted by the PCB chromophore from the SynCph1 structure (PDB 2VEA).

Tilt A-B Tilt B-C Tilt C-D
X-ray SynCph2 (PDB 4BWI) 19.2° 32.5° 59.8°
X-ray SynCph1 (PDB 2VEA) 9.8° 1.5° 26.3°
X-ray SynCph2 QM/MM optimized 17.8° 23.1° 40.9°
SynCph2-planar QM/MM optimized 19.5° 17.5° 41.6°