Table 1.
Name of the primer | Genome position (3' UTR) |
|||
---|---|---|---|---|
DEN-1 (199 bp) (10,469–10,667) | DEN-2 (211 bp) (1049–10,659) | DEN-3 (218 bp) (10,289–10,506) | DEN-4 (229 bp) (10,289–10,517) | |
Forward outer (F3) | 10,469–10,487 | 10,449–10,466 | 10,289–10,307 | 10,289–10,306 |
Backward outer (B3) | 10,667–10,648 | 10,659–10,642 | 10,506–10,490 | 10,517–10,500 |
Forward internal primer (FIP) [F1c + TTTT + F2] | F1c 10,552–10,531 | 10,530–10,511 | 10,376–10,355 | 10,375–10,353 |
F2 10,489–10,506 | 10,470–10,489 | 10,310–10,328 | 10,312–10,329 | |
Backward Internal primer (BIP) [B1 + TTTT + B2c] | B1 10,557–10,576 | 10,568–10,588 | 10,399–10,418 | 10,424–10,443 |
B2c 10,629–10,612 | 10,640–10,621 | 10,475–10,457 | 10,491–10,474 | |
Forward loop primer (FLP) | 10,525–10,508 | 10,509–10,493 | 10,354–10,331 | 10,349–10,333 |
Backward loop primer (BLP) | 10,583–10,600 | 10,600–10,616 | 10,430–10,446 | 10,445–10,461 |