Table 1. Comparison of a Small Subset of the Peptides Found by the Duncan Method to Those Found by X!Tandem and X!!Tandem.
| X!Tandem and X!!Tandem | Duncan | sequence | expectratio | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| spectrum | expect | hyperscore | mh | delta | z | spectrum | expect | hyperscore | mh | delta | z | ||
| 28678.1.1 | 3.90E-08 | 71.9 | 2177.147 | −0.050 | 3 | 14045.1.1 | 3.20E-10 | 71.9 | 2177.147 | −0.050 | 3 | ELLLPNWQGSGSHGLTIAQR | 121.88 |
| 4666.1.1 | 1.00E-05 | 54.4 | 1844.857 | 0.019 | 3 | 4666.1.1 | 7.70E-07 | 54.4 | 1844.857 | 0.019 | 3 | SPEPGQTWTHEVFSSR | 12.99 |
| 28337.1.1 | 2.30E-08 | 49.3 | 1337.718 | 0.010 | 2 | 13704.1.1 | 1.20E-03 | 49.3 | 1337.718 | 0.010 | 2 | RVTAYTVDVTGR | 0.00 |
| 1731.1.1 | 5.20E-03 | 33.5 | 2110.135 | −0.112 | 3 | 1731.1.1 | 1.80E-03 | 33.5 | 2110.135 | −0.112 | 3 | EGVKDIDITSPEFMIK | 2.89 |
| 8854.1.1 | 1.50E-08 | 61.4 | 2028.001 | −0.020 | 3 | 8854.1.1 | 8.00E-10 | 61.4 | 2028.001 | −0.020 | 3 | HEVTEISNTDVETQPGK | 18.75 |
| 7823.1.1 | 5.40E-06 | 55.1 | 1782.911 | 0.008 | 3 | 7823.1.1 | 7.20E-06 | 55.1 | 1782.911 | 0.008 | 3 | AGAISASGPELEGAGHSK | 0.75 |
| 27132.1.1 | 3.30E-04 | 37.5 | 1090.638 | −0.037 | 2 | 12499.1.1 | 5.30E-04 | 37.5 | 1090.638 | −0.037 | 2 | FQVTVPGAK | 0.62 |
| 16847.1.1 | 1.90E-04 | 35.6 | 1074.628 | 0.023 | 2 | 2214.1.1 | 5.30E-03 | 35.6 | 1074.628 | 0.023 | 2 | VGSLDVNVK | 0.04 |
| 8267.1.1 | 1.70E-04 | 43.1 | 2111.232 | −0.016 | 3 | 8267.1.1 | 1.40E-05 | 43.1 | 2111.232 | −0.016 | 3 | LKGPQITGPSLEGDLGLK | 12.14 |
| 13665.1.1 | 1.90E-05 | 49.0 | 2181.077 | 0.028 | 3 | 13665.1.1 | 7.30E-05 | 49.0 | 2181.077 | 0.028 | 3 | MDISAPDVEVHGPEWNLK | 0.26 |