Table 1.
Primer name | Primer sequence (5′->3′) | Hybridization temperature | PCR fragment size |
---|---|---|---|
(M) BRAF exon 11 F | TCCCTCTCAGGCATAAGGTAA | 55 °C | 313 bp |
(M) BRAF exon 11 R | CGAACAGTGAATATTTCCTTTGAT | 55 °C | |
(M) BRAF exon 15 F | TCATAATGCTTGCTCTGATAGGA | 55 °C | 224 bp |
(M) BRAF exon 15 R | GGCCAAAAATTTAATCAGTGCA | 55 °C | |
(M) NRAS exon 2 F | GAACCAAATGGAAGGTCACA | 55 °C | 301 bp |
(M) NRAS exon 2 R | TGGGTAAAGATGATCCGACA | 55 °C | |
(M) NRAS exon 3 F | GGTGAAACCTGTTTGTTGGA | 55 °C | 272 bp |
(M) NRAS exon 3 R | AACCTAAAACCAACTCTTCCCA | 55 °C | |
(M) KIT exon 11 F | GATCTATTTTTCCCTTTCTC | 55 °C | 174 bp |
(M) KIT exon 11 R | AGCCCCTGTTTCATACTGAC | 55 °C | |
(M) KIT exon 13 F | CATCAGTTTGCCAGTTGTGC | 55 °C | 295 bp |
(M) KIT exon 13 R | AGCAAGAGAGAACAACAGTCTGG | 55 °C | |
(M) KIT exon 17 F | TCATTCAAGGCGTACTTTTG | 55 °C | 350 bp |
(M) KIT exon 17 R | TCGAAAGTTGAAACTAAAAATCC | 55 °C | |
(M) KIT exon 18 F | CATTTCAGCAACAGCAGCAT | 60 °C | 287 bp |
(M) KIT exon 18 R | CAAGGAAGCAGGACACCAAT | 60 °C | |
(A) ACTIN F | CATGGTGCATCTCTGCCTTACA | 60 °C | 76 bp |
(A) ACTIN R | ACAGCCTGGATAGCAACGTACA | 60 °C | |
(A) GADPH F | GCCCCCGGTTTCTATAAATTG | 60 °C | 94 bp |
(A) GADPH R | CTGGCGACGCAAAAGAAGAT | 60 °C | |
(A) KIT F | TCCTCAAACAGGCATAGATTTCC | 60 °C | 69 bp |
(A) KIT R | TGTGGATAGCATGCCTTGGA | 60 °C | |
(A) MDM2 F | AGGACATCTTATGGCCTGCTTTAC | 60 °C | 63 bp |
(A) MDM2 R | GGGCAGGGCTTATTCCTTTT | 60 °C | |
(A) CDK4 F | ATTGCATCGTTCACCGAGATC | 60 °C | 65 bp |
(A) CDK4 R | CTTGACTGTTCCACCACTTGTCA | 60 °C | |
(A) CCDN1 F | CGTGGCCTCTAAGATGAAGGA | 60 °C | 62 bp |
(A) CCDN1 R | CGGTGTAGATGCACAGCTTCTC | 60 °C | |
(A) MITF F | TGTCACTGATCCACTCCTTTCCT | 60 °C | 59 bp |
(A) MITF R | TCCGGCTGCTTGTTTTGG | 60 °C |
Abbreviations : F, forward; R, reverse; bp, base pair, M, primer used for mutation studies; A, primer used for amplification studies