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. Author manuscript; available in PMC: 2013 Dec 16.
Published in final edited form as: Hum Pathol. 2013 May 9;44(9):1902–1911. doi: 10.1016/j.humpath.2013.01.025

Table 1.

Sequences of primers for gene mutation and amplification studies

Primer name Primer sequence (5′->3′) Hybridization temperature PCR fragment size
(M) BRAF exon 11 F TCCCTCTCAGGCATAAGGTAA 55 °C 313 bp
(M) BRAF exon 11 R CGAACAGTGAATATTTCCTTTGAT 55 °C
(M) BRAF exon 15 F TCATAATGCTTGCTCTGATAGGA 55 °C 224 bp
(M) BRAF exon 15 R GGCCAAAAATTTAATCAGTGCA 55 °C
(M) NRAS exon 2 F GAACCAAATGGAAGGTCACA 55 °C 301 bp
(M) NRAS exon 2 R TGGGTAAAGATGATCCGACA 55 °C
(M) NRAS exon 3 F GGTGAAACCTGTTTGTTGGA 55 °C 272 bp
(M) NRAS exon 3 R AACCTAAAACCAACTCTTCCCA 55 °C
(M) KIT exon 11 F GATCTATTTTTCCCTTTCTC 55 °C 174 bp
(M) KIT exon 11 R AGCCCCTGTTTCATACTGAC 55 °C
(M) KIT exon 13 F CATCAGTTTGCCAGTTGTGC 55 °C 295 bp
(M) KIT exon 13 R AGCAAGAGAGAACAACAGTCTGG 55 °C
(M) KIT exon 17 F TCATTCAAGGCGTACTTTTG 55 °C 350 bp
(M) KIT exon 17 R TCGAAAGTTGAAACTAAAAATCC 55 °C
(M) KIT exon 18 F CATTTCAGCAACAGCAGCAT 60 °C 287 bp
(M) KIT exon 18 R CAAGGAAGCAGGACACCAAT 60 °C
(A) ACTIN F CATGGTGCATCTCTGCCTTACA 60 °C 76 bp
(A) ACTIN R ACAGCCTGGATAGCAACGTACA 60 °C
(A) GADPH F GCCCCCGGTTTCTATAAATTG 60 °C 94 bp
(A) GADPH R CTGGCGACGCAAAAGAAGAT 60 °C
(A) KIT F TCCTCAAACAGGCATAGATTTCC 60 °C 69 bp
(A) KIT R TGTGGATAGCATGCCTTGGA 60 °C
(A) MDM2 F AGGACATCTTATGGCCTGCTTTAC 60 °C 63 bp
(A) MDM2 R GGGCAGGGCTTATTCCTTTT 60 °C
(A) CDK4 F ATTGCATCGTTCACCGAGATC 60 °C 65 bp
(A) CDK4 R CTTGACTGTTCCACCACTTGTCA 60 °C
(A) CCDN1 F CGTGGCCTCTAAGATGAAGGA 60 °C 62 bp
(A) CCDN1 R CGGTGTAGATGCACAGCTTCTC 60 °C
(A) MITF F TGTCACTGATCCACTCCTTTCCT 60 °C 59 bp
(A) MITF R TCCGGCTGCTTGTTTTGG 60 °C

Abbreviations : F, forward; R, reverse; bp, base pair, M, primer used for mutation studies; A, primer used for amplification studies