Table 2.
Organism | Genome size (Mbp) | Protein-coding genes | sORFsa | Verifiedb | %c | Source | |
---|---|---|---|---|---|---|---|
Prokaryotes | Bacillus subtilis | 4 | 4100 | 345 | 180 | 4 | Peptides, 2001. 22(10) |
Eukaryotes | Saccharomyces cerevisiae | 12 | 5865 | 299 | 247 | 4 | Genome Res, 2003. 13(2); |
Genome Res, 2006. 16(3) | |||||||
Arabidopsis thaliana | 120 | 29,157 | 7159 | 3241 | 11 | Plant Physiol, 2006. 142(3); | |
Genome Res, 2007. 17(5) | |||||||
Drosophila melanogaster | 180 | 13,907 | 4561 | 401 | 3 | Genome Biol, 2011. 12(11) | |
Mus musculus | 2500 | 31,035 | 1240 | 1167 | 4 | PLoS Genet, 2006. 2(4) |
It describes studies focused on large-scale discovery of SPs in species and their results.
Numbers of coding or annotated sORFs (<100 AA);
Numbers of sORFs with experimental evidence or known function;
The fraction of verified sORFs relative to previously annotated protein coding genes.