Table 1.
Isoform identification of pluripotency markers
| Pluripotency marker | RefSeq isoform identified | Novel isoforms identified |
| NODAL | NM_018055 | |
| TDGF1 | NM_001174136, NM_003212 | |
| PRMT5 | NM_001039619, NM_006109 | |
| KLF4 | NM_004235 | |
| TEAD4 | NM_003213, NM_201441 | |
| E-CADHERIN | NM_004360 | |
| LIN28A | NM_024674 | |
| ALPL/TNAP | NM_001127501, NM_000478 | |
| POU5F1 | NM_203289, NM_002701 | |
| NANOG | NM_024865 | |
| DNMT3B | Novel isoforms are identified with intron retention events | |
| ZFP42 | NM_174900 | A novel isoform has an alternative splicing site at the last exon |
| SALL4 | NM_020436 | A novel isoform (with 20% gene abundance) contains a novel exon |
| DPPA4 | NM_018189 | A novel isoform skips three exons |
| TERT | A novel isoform skips exon 7 and exon 8 and the exon-skipping junction is of high expression |