Skip to main content
. 2007 Nov 22;1(2):107–125. doi: 10.1111/j.1751-7915.2007.00009.x

Table 2.

Identity between hydrogenase large subunits derived from Escherichia coli (E. coli), Ralstonia eutropha H16 (R. eutropha), Rhodoccus opacus MR11 (R. opacus), Synechocystis sp. PCC 6803 (Syn. PCC 6803) and Desulfovibrio gigas (D. gigas).

E. coli
Hyd‐1 E. coli
Hyd‐2 E. coli
Hyd‐3 E. coli
Hyd‐4 R. eutropha HoxH R. opacus HoxH Syn. PCC 6803 HoxH D. gigas
large subunit
E. coli Hyd‐1 40.7% 13.9% 11.9% 18.8% 18.3% 16.1% 39.9%
E. coli Hyd‐2 40.7% 13.8% 11.0% 17.3% 18.1% 19.0% 41.6%
E. coli Hyd‐3 13.9% 13.8% 69.8% 13.1% 12.2% 12.4% 13.7%
E. coli Hyd‐4 11.9% 11.0% 69.8% 12.7% 12.0% 13.0% 12.4%
R. eutropha HoxH 18.8% 17.3% 13.1% 12.7% 85.2% 42.7% 19.9%
R. opacus HoxH 18.3% 18.1% 12.2% 12.0% 85.2% 42.0% 19.8%
Syn. PCC 6803 HoxH 16.1% 19.0% 12.4% 13.0% 42.7% 42.0% 17.8%
D. gigas large subunit 39.9% 41.6% 13.7% 12.4% 19.9% 19.8% 17.8%

Hyd‐1, Hyd‐2, Hyd‐3, Hyd‐4 are HyaB, HybC, HycE and HyfG of E. coli hydrogenases 1, 2, 3 and 4 respectively. Protein sequences for the large subunit or HoxH of hydrogenase were aligned by using a VectroNTI alignment software.