Table 2. Estimated number of independent alleles of SNPs and STRs required to achieve 80%, 90%, and 95% overall correct assignment in 23 Atlantic salmon populations for each ranking method.
Population dataset used for SNP ranking | ||||||||||||||
I (23) | II (16) | III (6) | ||||||||||||
GlobalF ST | PairwiseF ST | Delta | Outlier | GlobalF ST | PairwiseF ST | Delta | Outlier | GlobalF ST | PairwiseF ST | Delta | Outlier | RandomSNPs | STRs* | |
80% | 76 | 68 | 59 | 50 | 57 | 50 | 53 | 47 | 62 | 53 | 58 | n/a | 96 | 219 (∼18) |
90% | 113 | 104 | 100 | 81 | 90 | 82 | 87 | 71 | 98 | 87 | 95 | n/a | 149 | 336 (∼24) |
95% | 167 | 153 | 147 | 114 | 124 | 118 | 125 | 94 | 133 | 123 | 136 | n/a | 198 | 460 (∼28) |
Estimated number of STR loci is indicated in parentheses.