Table 1.
Observed variables extracted from the mouse BPM data.
Symbols | Variables | Description |
---|---|---|
cnts | counts | The number of times the mouse changes direction or activity type (e.g., when moving forward, it changes direction or completes a rear and then a holepoke). |
trans | transitions | The BPM chamber is divided into nine different regions (Fig. 1) – a transition is when the mouse moves from one region to another. |
CT | center time | The amount of time [sec] the mouse is in the center region (Region 5). |
h | entropy | Entropy quantifies the variety of different locomotor patterns (h = 0 for a repetitive locomotion). Higher entropy indicates larger variability in locomotion, hence lower predictability of next movement. |
d | spatial d | Spatial d, or dimensionality, quantifies the geometrical structure of the movement of the animal through space, showing whether the movement is in long, one-dimensional lines (d=1.0), in a meandering path (d=~1.5), or in more two-dimensional, localized movements (d=2.0). |
sCV | spatial CV | Spatial coefficient of variation in the transition from one region to another. A more preferential exhibition of a subset of transitions results in a higher value of sCV. |
tCV | temporal CV | Temporal coefficient of variation. A measure of the predictability of time spent in regions. Higher values of tCV indicate higher predictability. |
%vrear | %varied rears normalized | %vrear = (vrearn/cnts)*100, where vrearn = total rears - rrears, and rrears is the number of repeated rears at the same location. |
%vpoke | %varied pokes normalized | %vpokn = (vpokn/cnts)*100, where vpokn = total pokes - rpokes, and rpokes is the number of repeated pokes in the same hole without an intervening transition or rearing. Thus, varied pokes reflects bouts of holepoking behavior. |