Table 3. RMSd values, calculated on all atoms, of wt and mutated telomeric oligonucleotides obtained after 2 ns molecular dynamics simulations.
Model |
RMSd
|
|
---|---|---|
K+ | Na+ | |
1KF1 (parallel) | 3.20 | 3.70 |
143D (antiparallel) | 2.82 | 2.70 |
2HY9 (mixed) | 3.19 | 4.32 |
C1 | 4.28 | 4.85 |
C2 | 4.65 | |
C3 | 2.40 | |
A1T3 | 4.90 |
The reported values are expressed in Å.