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. Author manuscript; available in PMC: 2014 Feb 3.
Published in final edited form as: J Theor Biol. 2012 Aug 3;312:65–75. doi: 10.1016/j.jtbi.2012.07.013

Table 4.

Indicating average weights of ten top important features computed by MCRLR in the jackknife procedure using all of features for prediction of five RNA-binding domain subclasses. Positive values show preference of the features in related subclasses and negative values show avoidance of the features in related subclasses.

graphic file with name nihms397612u1.jpg
No. Feature/Average Value
7s RBD subclass Double -stranded RBD subclass mRNA RBD subclass rRNA RBD subclass tRNA RBD subclass
1 Number of Met in MP/1.517 Number of basic AAs in MP/0.967 Molecular weight/1.373 Number of His in MP/1.913 Number of Arg in IR/2.004
2 Number of Met in RC/1.274 Number of Glu in MP/0.900 Number of Ser in BR/1.176 Number of Arg in IR/-1.555 Number of His in sheet/2.003
3 Number of Cys in sheet/0.998 Dipole/0.900 Number of Cys in MP/1.142 Number of Ile in MP/1.499 Number of Pro in MP/-1.583
4 Number of His in seq./-0.920 Number of Glu in IR/0.891 Number of Ser in IR/-1.094 Number of Leu in helix/-1.481 Number of Ile in MP/-1.576
5 Number of Met in ER/0.990 Number of Tyr in MP/0.831 Isoelectric point/-1.007 Number of Met in RC/-1.458 Number of Asp in BR/1.371
6 Number of Glu in MP/-0.886 Number of Ala in BR/0.811 Number of Cys in RC/0.969 Number of Ser in RC/1.330 Number of Ile in IR/-1.335
7 Number of Tyr in helix/0.811 Number of Gln in RC/-0.799 Number of charged AAs in seq./-0.949 Number of Tyr in MP/-1.304 Number of Met in sheet/1.255
8 Number of Glu in IR/0.759 Number of Arg in MP/-0.779 Number of Asp in ER/0.934 Number of Val in helix/1.280 Number of Phe in ER/-1.226
9 Frequency of antiparallel HB/-0.753 Number of Lys in MP/0.752 Number of Arg in ER/-0.931 Number of His in ER/-1.269 Number of Phe in IR/1.166
10 Second patch size/-0.729 Number of Asp in MP/0.728 Number of Asp in IR/0.920 Number of Cys in RC/-1.258 Number of Gln in IR/1.114

MP: main patch, RC: randomcoil, ER: exposed regions, IR: intermediate regions, HB: hydrogen bond, AAs: amino acids, BR: buried regions, Seq.: Sequence.