. 2013 Dec 1;23(6):418–426. doi: 10.1089/nat.2013.0415

Table 1.

The Two Sets of DNA Aptamer Templates

Name^a	Sequence (5′→3′)	PS^b	PC^c
SIAp1	AAAAGA	0.23±0.11	0.06±0.02
SIAp2	AAAGAG	N/A	N/A
SIAp3	TAAAGA	0.57±0.15	0.31±0.15
SIAp4	AAAGAC	0.54±0.19 (0.46±0.13)	0.41±0.08 (0.30±0.09)
SIIAp1	CAGAAAAAAAC	0.4±0.2	0.41±0.14
SIIAp2	CAGAAAAAAAT	0.31±0.12	0.29±0.19

^{^a}

SI is designed based on total energy, and SII is designed using interaction energy.

^{^b}

Probabilities of designed aptamers and PS within 6<d_PS-lipid<16Å calculated from 10-ns simulations (top panel of Supplementary Fig. S1).

^{^c}

Probabilities of designed aptamers and PC within 6<d_PS-lipid<16Å calculated from (lower panel of Supplementary Fig. S1). Note that the numbers inside round brackets in both PS and PC column were calculated from 20-ns simulation results (Supplementary Fig. S2). Here we picked only one sequence (the best PS binding one) as example for an extended time simulation.

d_PS-lipid, PS–lipid separation distance; PC, phosphatidylcholine; PS, phosphatidylserine.