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. 2013 Dec 19;9(12):e1003956. doi: 10.1371/journal.pgen.1003956

Table 1. Strains and plasmids.

Strain Genotype/relevant properties Source/reference
DH10B F, mcrA, Δ(mrr-hsdRMS-mcrBC), Φ80dlacZΔM15, ΔlacX74, endA1, recA1, deoR, Δ(ara,leu)7697, araD139, galU, galK, nupG, rpsL [55]
MC1061 araD139, Δ(ara-leu)7679, ΔlacX74, galU, galK, rpsL, thi, sdR2, mcrB [56]
MG1655 F, λ [57]
DLT1900 MC1061 ΔaraFGH, Ωpcp18::araE533 [9]
DLT2202 MG1655 ΔaraFGH, Ωpcp18::araE533 This work
DLT2583 DLT2202 Δ(araBAD')-Ω(para-tetR::gfp) This work
DLT2687 DLT1900 ΔlacZ Ω(plac-sopA::xfp) This work
DLT2740 DLT2583 ΔlacZ Ω(plac-sopA::xfp) This work
DLT2721 DLT2687 pAM238 This work
DLT2722-6 DLT2687 pDAG209, pYAS47, -64, -65, -66, -67 This work
DLT2891 DLT2583 pDAG848, pAM238 This work
DLT2734-8 DLT2583 pDAG848, pYAS47, -64, -65, -66, -67 This work
DLT2867 DLT2740 pDAG848, pAM238 This work
DLT2741-2 DLT2740 pDAG848, pYAS47, -64 This work
Plasmid Relevant characteristics
pAM238 lacOPZ'Ωmcs in EcoRI-HindIII interval of pGB2, aadA + [58]
pDAG114 repFIA, ccdB , resD +, rsfF +, cat [59]
pDAG173 pDAG114 with sopAB control replaced by pLtetO [49]
pDAG209 pDAG114 ΔsopAB [59]
pDAG218 pDAG114 with lacZ inserted between sopB and sopC This work
pDAG848 pDAG209, tetO array This work
pDAG781 pDAG218 sopB-R36A This work
pDAG782 pDAG218 sopB-R36K This work
pDAG783 pDAG218 sopB-R42A This work
pDAG784 pDAG218 sopB-R42K This work
pYAS29 pDAG173 sopB-R42A This work
pYAS37 pDAG173 sopB-R42K This work
pYAS43 pDAG173 sopB-R36A This work
pYAS45 pDAG173 sopB-R36K This work
pYAS47 pAM238 plac-sopAB This work
pYAS64 pYAS47 sopB-R42A This work
pYAS65 pYAS47 sopB-R42K This work
pYAS66 pYAS47 sopB-R36A This work
pYAS67 pYAS47 sopB-R36K This work
pYAS70 pYAS47 Δ(sopA 115–358) This work
pYAS71 pYAS64 Δ(sopA 115–358) This work
pYAS81 pYAS47 sopB-R36A, R42A This work
pJYB259 pYAS47 sopB::mVenus This work
pJYB260 pYAS64 sopB::mVenus This work