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. 2013 Dec 19;8(12):e84386. doi: 10.1371/journal.pone.0084386

Table 1. Significantly up-regulated genes of strain C-6 cultured with different sulfur source.

Gene ID Description Expression ratio (BT/sodium sulfate)
fold by RT-qPCR
fold by RNA-seq
Group Ⅰ
GTC6_00280 alkanesulfonate monooxygenase [EC:1.14.14.5] 27±2 111
GTC6_04560 NADPH-dependent FMN reductase 23±1 22
GTC6_13080 putative FMNH2-dependent monooxygenase 11±3 43
GTC6_15154 putative FMNH2-dependent monooxygenase 27±1 75
GTC6_15109 alkanesulfonate monooxygenase (EC:1.14.14.5) 21±1 65
GTC6_01595 alkanesulfonate monooxygenase [EC:1.14.14.5] 29±2 92
GTC6_01600 putative FMNH2-dependent monooxygenase 42±1 169
GTC6_01605 2'-hydroxybiphenyl-2-sulfinate desulfinase [EC:3.13.1.3] 36±1 125
GTC6_06509 putative FMNH2-dependent monooxygenase 21±3 104
GTC6_06474 putative FMNH2-dependent monooxygenase 38±1 72
GTC6_06469 alkanesulfonate monooxygenase (EC:1.14.14.5) 29±1 111
GTC6_06464 alkanesulfonate monooxygenase (EC:1.14.14.5) 49±2 121
Group II
GTC6_00275 sulfonate/nitrate/taurine transport system substrate-binding protein 30±1 100
GTC6_00260 sulfonate/nitrate/taurine transport system ATP-binding protein 52±2 126
GTC6_00255 sulfonate/nitrate/taurine transport system permease protein 45±1 70
GTC6_10396 ABC transporter 14±1 34
GTC6_10391 binding-protein-dependent transport systems inner membrane component 10±2 30
GTC6_10386 binding-protein-dependent transport systems inner membrane component 13±1 30
GTC6_11646 putative ABC transporter substrate binding protein 22±1 68
GTC6_11651 ABC peptide transporter, permease component 18±1 47
GTC6_11656 ABC peptide transporter, permease component 12±1 44
GTC6_11661 ABC peptide transporter, ATP-binding component 32±1 78
GTC6_13085 putative peptide ABC transporter substrate binding protein 25±3 42
GTC6_13090 ABC transporter inner membrane protein 10±1 37
GTC6_13095 putative ABC transporter 11±1 39
GTC6_13100 ABC transporter-like protein 37±1 59
GTC6_15124 sulfonate/nitrate/taurine transport system permease protein 20±2 63
GTC6_15119 sulfonate/nitrate/taurine transport system ATP-binding protein 23±2 48
GTC6_15114 sulfonate/nitrate/taurine transport system substrate-binding protein 34±1 61
GTC6_01585 ABC transporter substrate-binding protein 51±1 188
GTC6_01590 hypothetical protein 54±3 176
GTC6_01610 sulfonate/nitrate/taurine transport system ATP-binding protein 34±1 112
GTC6_01615 sulfonate/nitrate/taurine transport system permease protein 50±1 120
GTC6_01620 putative ABC transporter substrate-binding protein 30±4 165
GTC6_15606 sulfonate/nitrate/taurine transport system ATP-binding protein 8±1 25
GTC6_15611 sulfonate/nitrate/taurine transport system substrate-binding protein 12±1 45
GTC6_15616 sulfonate/nitrate/taurine transport system permease protein 12±2 28