TABLE 1 .
Deep sequencing results of NalO4-treated and nontreated small RNA librariesa
Categoryb | HEK293-NI-NT |
HEK293-NI-NalO4 |
HEK293-SINV-NT |
HEK293-SINV-NalO4 |
||||
---|---|---|---|---|---|---|---|---|
Read count | Read % | Read count | Read % | Read count | Read % | Read count | Read % | |
Raw data | 21,631,645 | 34,131,455 | 20,753,238 | 28,263,345 | ||||
Filtered out | 92,556 | 3,589,935 | 146,674 | 5,425,669 | ||||
Unmapped | 840,747 | 7,135,376 | 1,276,025 | 5,143,518 | ||||
Mapped | 20,698,342 | 100.00 | 23,406,144 | 100.00 | 19,330,539 | 100.00 | 17,694,158 | 100.00 |
hsa miRNAs | 18,298,024 | 88.40 | 7,325,147 | 31.30 | 14,850,144 | 76.82 | 4,138,513 | 23.39 |
hsa rRNAs | 66,614 | 0.32 | 1,509,137 | 6.45 | 337,226 | 1.74 | 850,630 | 4.81 |
hsa tRNAs | 878,642 | 4.24 | 6,260,105 | 26.75 | 1,680,819 | 8.70 | 5,915,996 | 33.43 |
hsa snRNAs | 8,956 | 0.04 | 13,719 | 0.06 | 8,913 | 0.05 | 6,996 | 0.04 |
hsa snoRNAs | 91,453 | 0.44 | 93,919 | 0.40 | 111,048 | 0.57 | 70,898 | 0.40 |
hsa miscRNAs | 59,911 | 0.29 | 36,831 | 0.16 | 283,636 | 1.47 | 98,472 | 0.56 |
Only viral RNA | 491 | 0.00 | 37 | 0.00 | 400,252 | 2.07 | 262,916 | 1.49 |
Unannotated RNA | 1,294,251 | 6.25 | 8,167,249 | 34.89 | 1,658,501 | 8.58 | 6,349,737 | 35.89 |
HEK293 cells were infected with SINV or not infected (NI) and treated with sodium periodate (NalO4) or not treated with sodium periodate (NT).
Abbreviations: hsa, homo sapiens; miscRNAs, miscellaneous RNAs.