Table 1.

Copy-number altered regions in genomes of hepatocellular carcinoma cell lines

Cytoband	Start (Mb)	End (Mb)	Known cancer genes	Novel candidates
Amplicons
1q21.2-22	150.07	151.89	SHC1, CKS1B, ADAM15	CREB3L4, RAB1, mir190b, S100A14
3p26.1-25.3	6.90	9.43		LMCD1
3q26.2-26.31	170.07	170.24
	170.28	170.99	EVI1, MDS1, TERC
	171.21	173.50		FNDC3B
5p15.33-12	0.40	45.14	TRIO, AMACR, DAB2	LPCAT1, SEMA5A, CDH12
7p22.2-14.3	4.15	32.10	RAC1, ETV1, CHN2
7p12.1-11.2	52.79	55.17	EGFR
	56.00	56.53
8p11.21	40.44	40.62
8q24.21	129.21	129.29
11q13.2-13.3	65.85	66.44	RIN1, BRMS1	SLC29A2
	67.58	67.71
	67.91	69.35	LRP5, CCND1, ORAOV1	FGF4, FGF3
12p12.1	24.36	25.54	BCAS1, K-ras
20q13.31	53.94	53.96
Homozygous deletions
2q22.1	141.72	141.80	LRP1B
7q21.11	77.96	78.04		MAGI2
9p23	9.42	9.46		PTPRD
	11.90	12.00
9p21.3	21.85	21.90	MTAP, CDKN2A
	24.27	24.84
13q12.11	18.98	20.44	TPTE2, Tg737