Table 2.
Number and type of loci, genetic distance and marker density for the refined NP map
|
New LG |
Previous LG (Yagi et al. [14]) |
Total loci |
Published RAPD loci (in Yagi et al. [14]) |
New RAPD and STS loci |
Published SSR loci (in Yagi et al. [14]) |
New SSR loci |
Length of LGs (cM) |
Marker density (loci/cM) |
||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
SSR locus names |
Subtotal |
|||||||||||||
|
GS- |
MS-, DCD- |
CB-, CF- |
DCEST- |
CES- |
NES- |
|||||||||
|
SSR resource |
|
|||||||||||||
| Genomic, EST | Genomic | Genomic, EST | Genomic | EST | EST | EST | ||||||||
| NP_1 |
A7, A10 |
30 |
10 |
1 |
0 |
11 |
1 |
0 |
0 |
7 |
0 |
19 |
90.6 |
0.33 |
| NP_2 |
|
11 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
7 |
0 |
11 |
46.3 |
0.24 |
| NP_3 |
Lower region of A1 |
26 |
12 |
0 |
1 |
4 |
0 |
0 |
1 |
8 |
0 |
13 |
67.3 |
0.39 |
| NP_4 |
A6 |
41 |
21 |
0 |
1 |
10 |
0 |
0 |
0 |
9 |
0 |
19 |
59.5 |
0.69 |
| NP_5 |
A4 |
17 |
8 |
0 |
0 |
5 |
0 |
2 |
0 |
2 |
0 |
9 |
66.1 |
0.26 |
| NP_6 |
Upper region of A1 |
15 |
5 |
0 |
2 |
1 |
0 |
2 |
1 |
4 |
0 |
8 |
44.3 |
0.34 |
| NP_7 |
A5 |
24 |
11 |
1 |
1 |
4 |
0 |
1 |
1 |
5 |
0 |
11 |
78.5 |
0.31 |
| NP_8 |
A12 |
15 |
3 |
3 |
0 |
3 |
0 |
2 |
0 |
4 |
0 |
9 |
106.6 |
0.14 |
| NP_9 |
A8 |
24 |
17 |
1 |
0 |
3 |
0 |
2 |
0 |
1 |
0 |
6 |
51.0 |
0.47 |
| NP_10 |
A9 |
20 |
4 |
2 |
0 |
9 |
0 |
1 |
0 |
4 |
0 |
14 |
58.2 |
0.34 |
| NP_11 |
A13, A15 |
16 |
5 |
1 |
0 |
3 |
0 |
2 |
0 |
5 |
0 |
10 |
64.7 |
0.25 |
| NP_12 |
A11, A14 |
20 |
8 |
0 |
2 |
4 |
0 |
0 |
0 |
6 |
0 |
10 |
42.9 |
0.47 |
| NP_13 |
A2 |
32 |
15 |
0 |
0 |
6 |
1 |
0 |
0 |
5 |
5 |
17 |
93.1 |
0.34 |
| NP_14 |
A3 |
33 |
13 |
1 |
2 |
8 |
1 |
1 |
1 |
1 |
5 |
17 |
80.7 |
0.41 |
| NP_15 |
A16 |
24 |
5 |
0 |
0 |
5 |
0 |
1 |
0 |
10 |
3 |
19 |
28.5 |
0.84 |
| Total | 348 | 137 | 10 | 9 | 80 | 3 | 14 | 4 | 78 | 13 | 192 | 978.3 | 0.36 | |