Table 1. Primers used for amplification of EGFR exons 18-21.
EGFR Exon | Sanger sequencing 5’-3’ | NGS 5’-3’ a | Lenght (bp) |
---|---|---|---|
Ex18 Fw | CATgTCTggCACTgCTTTCC | ggCTgAggTgACCCTTgTC | 184 |
Ex18 Rv | AgggACCTTACCTTATACACC | gCCTgTgCCAgggACCTTAC | |
Ex19 Fw | AgCATgTggCACCATCTCAC | AgCATgTggCACCATCTCAC | 182 |
Ex19 Rv | ATgAgAAAAggTgggCCTgA | CCCACACAgCAAAgCAgAAA | |
Ex20 Fw | AgCCACACTgACgTgCCTCT | AgCCACACTgACgTgCCTCT | 208 |
Ex20 Rv | CCTTATCTCCCCTCCCCgTA | TgCACACACCAgTTgAgCAg | |
Ex21 Fw | TgCAgAgCTTCTTCCCATgA | CCTCACAgCAgggTCTTCTC | 196 |
Ex21 Rv | gCATgTgTTAAACAATACAgC | CCACCTCCTTACTTTgCCTCCT |
a Primers for 454 next generation sequencing are linked to a sequence of 10 nucleotides (MID – Multiple Identifier), 4 nucleotide of “junction” and 25 nucleotide of “universal sequence”, according to manufacturer’s instruction (not shown in the Table). Ex, Exon; Fw, Forward; Rv, Reverse.