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. 2013 Dec 23;8(12):e83336. doi: 10.1371/journal.pone.0083336

Table 6. Genes involved in flavonoid biosynthesis along with their RPKM values.

Gene Name EC number Transcript ID Total ESTs RPKM value Number of read
phenylalanine ammonia lyase 4.3.1.24 contig 634698, 642066, 657575, 668909, 672281, 691416, 702626, 703366, 703960, 716568, 719604, 735030, 743228, 748710, 753296, 754648, 755468, 760124, 760936, 769576, 777484, 783272, 788948, 790736, 799910 25 241.09 474
cinnamate 4-hydroxylase 1.14.13.11 contig 626042, 673051, 688226, 704750, 755308, 758396, 791376, 794622 8 207.68 111
4-coumarate CoA ligase 6.2.1.12 contig 658459, 673103, 685642, 712208, 722868, 734074, 750294, 752608, 757946, 758914, 759276, 760860, 761416, 775342, 776318, 790346, 790364, 792818, 793014, 793670, 803146, 811102, 815080 23 1206.79 979
chalcone synthase 2.3.1.74 contig 619401, 623782, 642216, 664433, 694872, 703744, 711022, 729452, 742538, 750790, 752302, 775504, 776662 790158, 803096, 804748 16 158.11 83
chalcone isomerase 5.5.1.6 contig 618735, 654743, 666277, 716164, 716334, 761068, 765552, 772422, 776068, 783048, 785354, 790738 12 343.98 174
flavonoid 3′- hydroxylase 1.14.13.21 contig 645173, 688012, 697330, 716994, 717416, 719790, 732470, 733298, 746820, 756294, 765426, 780410, 781518, 796884, 799424, 805552, 813496 18 421.18 1013
flavonoid 3′, 5′-hydroxylase 1.14.13.88 contig 638078, 679673, 705666 3 31.43 18
flavone synthase 1.14.11.22 contig 682129 1 30.66 24
flavanone 3-hydroxylase 1.14.11.9 contig 617797, 622328, 628840, 631844, 649435, 649459, 656551, 665101, 712318, 715714, 721514, 724718, 728206, 741180, 760132, 763024, 767854, 789424, 790626, 792572, 800076, 801784, 803294, 812892 24 475.11 263
flavonol synthase 1.14.11.23 contig 631844, 656551, 721514, 741180, 763024, 767854, 800076, 801784, 812892 9 475.11 263
dihydroflavonol 4-reductase 1.1.1.219 contig 701984, 702106, 781542, 789140, 789820, 796570 6 729.12 679
anthocyanidin synthase 1.14.11.19 contig 698156, 706394, 733490, 752474, 778182, 794658 6 18.9 61
anthocyanidin reductase 1.3.1.77 contig 660955, 667861, 675719, 718414, 719766, 730968, 756916, 794760 8 22.83 17