Table 2. Summary of SNPs and nucleotide diversity.

		All (65,827,877 bp)1			CDS (22,536,684 bp)1			Non-CDS (43,291,193 bp)1
		SNPs	2	3	SNPs	2	3	SNPs	2	3
All	n = 32	1,042,719	0.32	0.39	256,361	0.23	0.28	786,358	0.36	0.45
O. rufipogon	n = 10	855,296	0.40	0.32	210,446	0.29	0.23	644,850	0.46	0.37
O. sativa	n = 22	494,458	0.24	0.19	122,504	0.17	0.13	371,954	0.27	0.21
indica	n = 12	380,807	0.21	0.14	95,410	0.15	0.10	285,397	0.24	0.16
japonica	n = 10	230,093	0.11	0.09	57,316	0.08	0.06	172,777	0.12	0.10

¹Sites from 31,036 genes.

²Estimator of θ (4Nµ) based on the average numbers of pairwise nucleotide differences [64].

³Watterson’s estimator of θ (4Nµ) based on the number of segregating sites [27].