Table 4. SSR marker loci significantly associated with lint yield traits and their explained proportion of phenotypic variation in three different environments.
| Traitsa | Marker loci | Chr. | Position | −Log10 P | R2 | ||||
| E1b | E2b | E3b | E1b | E2b | E3b | ||||
| LY | NAU3269c | A05(Chr.05) | 182.215 | 3.43 | 4.42 | 3.33 | 0.0283 | 0.0460 | 0.0305 |
| NAU5166c | A10(Chr.10) | 23.423 | ns | 5.49 | ns | 0.0540 | |||
| NAU2935 | A10(Chr.10) | 51.592 | ns | 4.00 | ns | 0.0472 | |||
| JESPR204c | A13(Chr.13) | 59.714 | 4.12 | 3.00 | ns | 0.0460 | 0.0408 | ||
| CIR246c | D02(Chr.14) | 112.473 | ns | ns | 3.55 | 0.0444 | |||
| BNL3594c | D06(Chr.25) | 7.66 | ns | 4.51 | ns | 0.0765 | |||
| TMK19c | D06(Chr.25) | 70.38 | 4.30 | 2.77 | 3.97 | 0.0421 | 0.0321 | 0.0428 | |
| NAU3100c | D09(Chr.23) | 25.262 | 3.67 | 5.38 | 4.31 | 0.0408 | 0.0708 | 0.0541 | |
| NAU2776c | D10(Chr.20) | 9.452 | ns | 3.81 | 2.54 | 0.0441 | 0.0276 | ||
| SY | NAU3269 | A05(Chr.05) | 182.215 | 2.25 | 4.16 | 2.43 | 0.0185 | 0.0441 | 0.0219 |
| CIR246 | D02(Chr.14) | 112.473 | ns | ns | 4.23 | 0.0536 | |||
| BNL3594 | D06(Chr.25) | 7.66 | ns | 4.61 | ns | 0.0797 | |||
| NAU3100 | D09(Chr.23) | 25.262 | ns | 4.03 | 2.82 | 0.0561 | 0.0384 | ||
| BN | NAU6584 | A03(Chr.03) | 74.975 | 3.53 | 2.29 | ns | 0.0393 | 0.0291 | |
| NAU3269 | A05(Chr.05) | 182.215 | 2.08 | 3.52 | 3.45 | 0.0174 | 0.0364 | 0.0344 | |
| BNL3594 | D06(Chr.25) | 7.66 | ns | 3.62 | ns | 0.0667 | |||
| TMK19 | D06(Chr.25) | 70.38 | 3.58 | ns | 2.41 | 0.0371 | 0.0284 | ||
| NAU493 | D07(Chr.16) | 113.413 | 3.91 | ns | ns | 0.0338 | |||
| NAU3100 | D09(Chr.23) | 25.262 | ns | 3.48 | ns | 0.0492 | |||
| BW | BNL1414 | A09(Chr.09) | 95.911 | ns | 3.26 | 3.72 | 0.0418 | 0.0445 | |
| NAU4047 | A12(Chr.12) | 11.118 | 3.29 | 4.17 | ns | 0.0332 | 0.0461 | ||
| NAU3398 | A13(Chr.13) | 3.311 | 3.47 | 3.46 | ns | 0.0565 | 0.0603 | ||
| JESPR208 | D09(Chr.23) | 118.225 | ns | 4.01 | 3.69 | 0.0515 | 0.0445 | ||
| LP | NAU3269 | A05(Chr.05) | 182.215 | 3.54 | 2.21 | 2.72 | 0.0318 | 0.0202 | 0.0259 |
| NAU5166 | A10(Chr.10) | 23.423 | 2.33 | 4.36 | 2.74 | 0.0180 | 0.0410 | 0.0244 | |
| NAU2508 | A10(Chr.10) | 128.028 | 4.45 | 3.62 | 4.68 | 0.0523 | 0.0481 | 0.0609 | |
| NAU980 | A11(Chr.11) | 0 | 3.40 | ns | 3.75 | 0.0565 | 0.0672 | ||
| JESPR135 | A11(Chr.11) | 55.787 | 3.79 | 6.64 | 3.80 | 0.0316 | 0.0645 | 0.0354 | |
| NAU3398 | A13(Chr.13) | 3.311 | 3.50 | ns | ns | 0.0499 | |||
| JESPR204 | A13(Chr.13) | 59.714 | 3.73 | 2.96 | 2.22 | 0.0441 | 0.0396 | 0.0311 | |
| BNL3590 | D03(Chr.17) | 39.284 | 4.70 | ns | 2.89 | 0.0491 | 0.0338 | ||
| TMK19 | D06(Chr.25) | 70.38 | 5.97 | 4.58 | 3.67 | 0.0604 | 0.0518 | 0.0419 | |
| NAU3100 | D09(Chr.23) | 25.262 | 4.50 | 3.35 | 2.89 | 0.0535 | 0.0458 | 0.0400 | |
| NAU3917 | D10(Chr.20) | 31.125 | ns | 3.57 | ns | 0.0403 | |||
| BNL1404 | D11(Chr.21) | 33.571 | 4.48 | 6.20 | 3.51 | 0.0381 | 0.0601 | 0.0323 | |
| Gh508 | D11(Chr.21) | 54.48 | 2.15 | 3.37 | 3.81 | 0.0163 | 0.0306 | 0.0354 | |
| NAU2361 | D11(Chr.21) | 101.215 | 4.05 | 4.30 | 4.03 | 0.0637 | 0.0734 | 0.0703 | |
| LI | NAU3269 | A05(Chr.05) | 182.215 | 4.98 | 2.77 | 2.38 | 0.0492 | 0.0263 | 0.0232 |
| NAU980 | A11(Chr.11) | 0 | 8.85 | 2.34 | 2.80 | 0.0896 | 0.0476 | 0.0572 | |
| JESPR135 | A11(Chr.11) | 55.787 | ns | 5.43 | 2.34 | 0.0520 | 0.0209 | ||
| Gh369 | A11(Chr.11) | 84.701 | 3.77 | 2.09 | ns | 0.0479 | 0.0300 | ||
| NAU1151 | A12(Chr.12) | 97.965 | 6.08 | ns | ns | 0.0563 | |||
| NAU3398 | A13(Chr.13) | 3.311 | 6.01 | 2.49 | ns | 0.0819 | 0.0415 | ||
| JESPR204 | A13(Chr.13) | 59.714 | ns | 3.68 | ns | 0.0481 | |||
| CIR246 | D02(Chr.14) | 112.473 | 4.75 | 3.14 | ns | 0.0577 | 0.0417 | ||
| BNL3590 | D03(Chr.17) | 39.284 | 3.30 | 2.70 | 3.47 | 0.0367 | 0.0313 | 0.0426 | |
| NAU2233 | D05(Chr.19) | 171.278 | 4.86 | 2.15 | ns | 0.0596 | 0.0304 | ||
| TMK19 | D06(Chr.25) | 70.38 | 4.83 | 4.02 | ns | 0.0519 | 0.0455 | ||
| NAU3100 | D09(Chr.23) | 25.262 | 5.90 | 2.74 | 3.47 | 0.0719 | 0.0384 | 0.0493 | |
| NAU2776 | D10(Chr.20) | 9.452 | ns | ns | 3.57 | 0.0430 | |||
| NAU3917 | D10(Chr.20) | 31.125 | ns | 3.66 | 2.03 | 0.0413 | 0.0245 | ||
| BNL1404 | D11(Chr.21) | 33.571 | ns | 5.85 | 2.72 | 0.0564 | 0.0250 | ||
| Gh508 | D11(Chr.21) | 54.48 | ns | 3.67 | 3.41 | 0.0338 | 0.0327 | ||
| NAU2361 | D11(Chr.21) | 101.215 | 6.27 | 5.16 | 4.58 | 0.0940 | 0.0845 | 0.0812 | |
| SI | NAU493 | D07(Chr.16) | 113.413 | 3.70 | 2.85 | 5.24 | 0.0385 | 0.0290 | 0.0575 |
a See Table 2 for abbreviations.
b E1: Jiangpu in 2009; E2: Dafeng in 2010; E3: Zhengzhou in 2010.
c Markers associated with lint yield simultaneously associated more than one its component.