Table 3. Resume of the main outcomes concerning genomic sequence variants (SVs) detected.
Genomic sequence variants | |||||||
g.226G>A | g.229T>A | g.355G>A | g.1914G>C | g.2037G>C | g.2041A>C | g.2065T>C | |
Minor allele percentage (%) | |||||||
Normal | 7.69 | ||||||
BeL | 37.50 | 25.00 | 37.50 | 25.00 | |||
MaL | 18.75 | 25.00 | 16.67 | 33.33 | 25.00 | ||
MeL | 16.67 | 33.33 | 16.67 | 83.33 | 33.33 | ||
Heterozygosis percentage (%) | |||||||
Normal | 15.38 | ||||||
BeL | 75.00 | 50.00 | 25.00 | 50.00 | |||
MaL | 37.50 | 50.00 | 33.33 | 33.33 | 50.00 | ||
MeL | 33.33 | 00.00 | 33.33 | 33.33 | 66.67 | ||
Allelic Association tests | |||||||
Normal vs. CMLs | No | No | Yes | Yes | Yes | Yes | Yes |
Genotypic Association tests | |||||||
Normal vs. CMLs | No | No | No | Yes | Yes | Yes | Yes |
Clinicopathological Correlation | |||||||
CMLs | No | No | Yes | Yes | No | No | No |
SVs and AA changes analysis in Total Group of Samples | |||||||
SVs Position | Exon 11 | Exon 11 | Intron 12 | Intron 14 | Exon 15 | Exon 15 | Exon 15 |
Haplotypes with SVs | 7 | 17 | No | 15; 16; 18 | 15; 18 | 11; 15; 17 | 15; 16; 17; 18; 19 |
Percentage of SV in Haplotypes (%) | 8 | 0.5 | <0.05 | 0.15 | 0.1 | 0.35 | 0.25 |
AA changes | Arg46Lys | Val47Glu | NA | NA | Ala205Pro | His206Pro | Val214Ala |
Probably effect in protein | Benign | Damage | NA | NA | Benign | Damage | Damage |
Sequence variants key marks reveal by experimental, statistic and in silico analysis. A detailed integrative analysis of nsSVs and their corresponding amino acid changes. The haplotypes corresponds to the frequent haplotypes detected in total samples (frequency >5%). SVs with probably damage effect in protein are in bold text. (%) Percentage. (NA) not applicable. (No) not observed.