Table 2. dN/dS ratios of the env gene on internal branches of trees from representative HERV families.
Class | Family | No. of elements | dN/dS | P value* |
---|---|---|---|---|
I | HERV-E | 26 | 0.22 | <0.001 |
HERV-H† | 60 | 0.24 | <0.001 | |
HERV-T‡ | 12 | 0.12 | <0.001 | |
HERV-R | 9 | 0.45 | 0.05-0.1 | |
II | HERV-HML3 | 91 | 0.73 | <0.05 |
HERV-HML5 | 30 | 0.40 | <0.001 | |
HERV-HML6 | 15 | 0.35 | <0.001 | |
III | HERV-S | 34 | 0.21 | <0.001 |
The significance of the difference in likelihood if this ratio is fixed at 1 is shown.
Taken from critical values on the χ2 distribution.
Only for HERV-H elements that have an intact env.
Excluding elements copied by segmental duplication; this family is also termed HERV-S71.