Table 3. Types of mutations detected in exons 5-9 p53 in the stratum granulosum of human SCC.
Base change (total no.) | Coding strand | Codon p53 | Sequence | AA change* | Lesion region† |
---|---|---|---|---|---|
UVA fingerprints | |||||
AT → CG (1) | A → C | 311 | caAca‡ | Asn → Thr | SCC4,1 |
UVB fingerprints | C → T | 289 | ctCc‡ | Leu → Leu | SCC1,1 |
GC → AT (9) | C → T | 157 | gtCc‡ | Val → Val | SCC1,6 |
C → T | 233 | cCact‡§ | His → Tyr | SCC1,3 | |
C → T | 318 | cCaa‡§ | Pro → Leu | SCC4,1 | |
C → T | 314 | tCct‡ | Ser → Phe | SCC4,3 | |
C → T | 296 | tCacc‡ | His → Tyr | SCC4,6 | |
C → T | 251 | atCc‡ | Ile → Ile | SCC7,1 | |
G → A | 197 | aGtgg‡ | Val → Met | SCC3,1 | |
G → A | 226 | gGct‡ | Gly → Asp | SCC6,6 | |
ROS¶ | |||||
GC → TA (6) | G → T | 290 | cGca | Arg → Leu | SCC4,6 |
C → A | 195 | atCc‡ | Ile → Ile | SCC3,1 | |
C → A | 208 | gaCa | Asp → Glu | SCC3,1 | |
C → A | 312 | acCa‡§ | Thr → Thr | SCC4,1 | |
C → A | 309 | cCca‡§ | Pro → His | SCC4,3 | |
C → A | 313 | agCt‡ | Ser → Arg | SCC4,3 | |
GC → CG (6) | G → C | 271 | tGagg‡ | Glu → Gln | SCC1,3 |
G → C | 228 | tGact‡ | Asp → His | SCC6,6 | |
G → C | 326 | aGaat‡ | Glu → Gln | SCC6,6 | |
C → G | 190 | cCtc‡§ | Pro → Arg | SCC1,1 | |
C → G | 252 | cCtca‡§ | Leu → Val | SCC7,1 | |
C → G | 301 | gCccc‡ | Pro → Ala | SCC1,3 | |
GC → AT (1) | C → T | 310 | aaCa | Asn → Asn | SCC4,1 |
Other changes | |||||
AT → GC (3) | T → C | 195 | aTcc‡ | Ile → Thr | SCC1,1 |
A → G | 196 | cgAg‡ | Arg → Arg | SCC3,1 | |
A → G | 249 | gAggc‡ | Arg → Gly | SCC1,1 | |
AT → TA (3) | T → A | 134 | gTttt‡ | Phe → Ile | SCC1,6 |
A → T | 195 | tAtcc | Ile → Phe | SCC1,1 | |
A → T | 310 | aAca‡ | Asn → Ile | SCC4.3 | |
CpG sites (2) | C → T | 152 | cCgc‡§ | Pro → Leu | SCC1,6 |
C → T | 158 | cCgcg‡§ | Arg → Cys | SCC1,6 |
Codons in bold type refer to hot-spot codons.
Amino acid changes are shown in bold type.
Lesion number and region laser-captured as defined in Fig. 1A.
Base-pair substitutions occur at Py-Py sites or Py runs on either nontranscribed or transcribed strand.
5′G of 5′-GG-3′ on either nontranscribed or transcribed strand.
Base changes potentially attributable to UVA indirectly through the production of ROS, not used as UVA fingerprints for data analysis.