Table 1. Thermodynamic analysis of the d3'EBS1*/IBS1* equilibrium by different methods.
Imaging condition | Fraction of docked d3'EBS1* (%) | K a (L µmol−1) | |
Gaussian fitting (method 1) | no M(II)(NO3)2 | 8.2±3.0 | 3.6±1.3 |
1 mM Ni(NO3)2 | 18.5±6.1 | 9.1±3.7 | |
1 mM Co(NO3)2 | 28.6±5.9 | 16.1±4.6 | |
Dwell time analysis (HMM, method 2) | no M(II)(NO3)2 | 15.6±6.4 | 7.4±3.6 |
1 mM Ni(NO3)2 | 24.6±6.3 | 13.1±4.5 | |
1 mM Co(NO3)2 | 33.3±8.4 | 20.1±7.5 | |
Histogram thresholding (method 3) | no M(II)(NO3)2 | 7.8±2.6 | 3.4±1.2 |
1 mM Ni(NO3)2 | 16.3±5.4 | 7.8±3.1 | |
1 mM Co(NO3)2 | 25.5±6.0 | 13.7±4.5 |
The experimental error was estimated by bootstrapping and accounts for 99.7% of the variability observed (3σ boba, “68–95–99.7 rule” [66]). Association constants K a were calculated from normalized cumulated FRET histograms or dwell times under the assumption that [IBS] = [IBS1*]tot as described in the Supplementary Information S1 (Eqs. S1 and S2).