Table 3. GSEA analysis for the effect of IMO-8400 over canonical pathways (C2 collection) and psoriasis related pathways (a selection of the significant pathways is presented).
MolSigDb C2 collection | N | ES | NES | FDR |
---|---|---|---|---|
IL-23 Pathway (PID) | 31 | -0.84 | -2.57 | <10-4 |
Cytokine Receptor Interaction (KEGG) | 191 | -0.61 | -2.54 | <10-4 |
Cell Cycle (Reactome) | 344 | -0.55 | -2.46 | <10-4 |
IL-12 Pathway (PID) | 56 | -0.68 | -2.35 | <10-4 |
Graft Versus Host Disease (KEGG) | 23 | -0.80 | -2.24 | 4.94E-05 |
IL-27 Pathway (PID) | 23 | -0.77 | -2.23 | 4.09E-05 |
Type I Diabetes Mellitus (KEGG) | 24 | -0.75 | -2.17 | 1.01E-04 |
Natural Killer Cell Mediated Cytotoxicity (KEGG) | 93 | -0.58 | -2.15 | 3.23E-04 |
Allograft Rejection (KEGG) | 22 | -0.76 | -2.12 | 5.30E-04 |
Chemokine Signaling Pathway (KEGG) | 161 | -0.50 | -2.04 | 0.0017 |
JAK-STAT Signaling Pathway (KEGG) | 113 | -0.52 | -2.02 | 0.0019 |
Interferon Signaling (Reactome) | 117 | -0.51 | -2.00 | 0.0023 |
Toll Endogenous Pathway (PID) | 23 | -0.70 | -1.99 | 0.0029 |
Toll-Like Receptor Signaling Pathway (KEGG) | 81 | -0.53 | -1.96 | 0.0046 |
STAT3 Pathway (ST) | 11 | -0.81 | -1.90 | 0.0076 |
IL-6 Pathway (PID) | 44 | -0.53 | -1.76 | 0.0293 |
Psoriasis-related gene sets | ||||
Genes down-regulated after 2 weeks of IL-17 antagonist Ixekinumab | 675 | -0.57 | -2.70 | <10-4 |
Up-regulated by IFNγin Normal Skin (JID, 2012) | 722 | -0.53 | -2.54 | <10-4 |
KC IL-17 Up | 41 | -0.72 | -2.36 | <10-4 |
RHE IFNγ Up | 178 | -0.56 | -2.33 | <10-4 |
Fibroblasts IL-17 Up | 37 | -0.73 | -2.29 | <10-4 |
Additive IL-17 & IL-22 KC | 19 | -0.74 | -2.02 | 3.51x10-4 |
Synergistic IL-17 & IL-22 KC | 26 | -0.67 | -2.00 | 4.05 x10-4 |
KC IFNα Up | 24 | -0.69 | -1.98 | 6.19 x10-4 |
Additive IL-17 & TNFα in KC | 165 | -0.43 | -1.76 | 0.0062 |
Synergistic IL-17 & TNFα in KC | 128 | -0.38 | -1.51 | 0.0386 |
KC TNF Up | 460 | -0.31 | -1.42 | 0.0633 |
KC IFNγUp | 872 | -0.28 | -1.33 | 0.0957 |
N = number of genes detected in each pathway