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. 2013 Dec 27;8(12):e84634. doi: 10.1371/journal.pone.0084634

Table 3. GSEA analysis for the effect of IMO-8400 over canonical pathways (C2 collection) and psoriasis related pathways (a selection of the significant pathways is presented).

MolSigDb C2 collection N ES NES FDR
IL-23 Pathway (PID) 31 -0.84 -2.57 <10-4
Cytokine Receptor Interaction (KEGG) 191 -0.61 -2.54 <10-4
Cell Cycle (Reactome) 344 -0.55 -2.46 <10-4
IL-12 Pathway (PID) 56 -0.68 -2.35 <10-4
Graft Versus Host Disease (KEGG) 23 -0.80 -2.24 4.94E-05
IL-27 Pathway (PID) 23 -0.77 -2.23 4.09E-05
Type I Diabetes Mellitus (KEGG) 24 -0.75 -2.17 1.01E-04
Natural Killer Cell Mediated Cytotoxicity (KEGG) 93 -0.58 -2.15 3.23E-04
Allograft Rejection (KEGG) 22 -0.76 -2.12 5.30E-04
Chemokine Signaling Pathway (KEGG) 161 -0.50 -2.04 0.0017
JAK-STAT Signaling Pathway (KEGG) 113 -0.52 -2.02 0.0019
Interferon Signaling (Reactome) 117 -0.51 -2.00 0.0023
Toll Endogenous Pathway (PID) 23 -0.70 -1.99 0.0029
Toll-Like Receptor Signaling Pathway (KEGG) 81 -0.53 -1.96 0.0046
STAT3 Pathway (ST) 11 -0.81 -1.90 0.0076
IL-6 Pathway (PID) 44 -0.53 -1.76 0.0293
Psoriasis-related gene sets
Genes down-regulated after 2 weeks of IL-17 antagonist Ixekinumab 675 -0.57 -2.70 <10-4
Up-regulated by IFNγin Normal Skin (JID, 2012) 722 -0.53 -2.54 <10-4
KC IL-17 Up 41 -0.72 -2.36 <10-4
RHE IFNγ Up 178 -0.56 -2.33 <10-4
Fibroblasts IL-17 Up 37 -0.73 -2.29 <10-4
Additive IL-17 & IL-22 KC 19 -0.74 -2.02 3.51x10-4
Synergistic IL-17 & IL-22 KC 26 -0.67 -2.00 4.05 x10-4
KC IFNα Up 24 -0.69 -1.98 6.19 x10-4
Additive IL-17 & TNFα in KC 165 -0.43 -1.76 0.0062
Synergistic IL-17 & TNFα in KC 128 -0.38 -1.51 0.0386
KC TNF Up 460 -0.31 -1.42 0.0633
KC IFNγUp 872 -0.28 -1.33 0.0957

N = number of genes detected in each pathway