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. 2013 Nov 5;164(1):321–339. doi: 10.1104/pp.113.224279

Table I. Common differentially expressed up-regulated genes in the intact mature flavedo of two independent transgenic AS cv Navelina sweet orange plants (versus EV plants).

Description Citrus Unigene AS3 Fold Change AS7 Fold Change Most Similar Ath Gene
Defense response
 Cyclic nucleotide-regulated ion channel (CNGC2) aC32102F03EF_c 2.03 1.88 AT5G15410
 Cyclic nucleotide-regulated ion channel (CNGC2) aCL5832Contig1 3.60 2.90 AT5G15410
 Disease resistance protein (NBS-LRR class) aCL5233Contig1 1.75 2.12 AT3G14460
 Yellow leaf-specific gene9 (YLS9)/harpin-induced1 family protein aCL2389Contig2 2.06 1.63 AT2G35980
 Nonspecific lipid transfer protein1 (LTP1) aCL4Contig13 3.31 3.46 AT2G38540
 Phe ammonia-lyase1 (PAL1) aCL1166Contig2 3.47 1.96 AT2G37040
 Protein phosphatase 2C, putative (PP2C) aCL683Contig1 2.33 3.41 AT2G30020
 Similar to zinc finger (CCCH-type) family protein (CZF1) aC31603G11EF_c 2.38 3.53 AT2G40140
 Chalcone synthase/naringenin-chalcone synthase aCL27Contig2 1.85 1.94 AT5G13930
 Encodes a member of the ERF subfamily B-3 of ERF/AP2 (ATERF-6) aCL337Contig1 1.63 3.43 AT4G17490
 R2R3-MYB family transcription factor (MYB73) aCL693Contig1 3.18 2.34 AT4G37260
 No apical meristem (NAM) family protein (NAC72) aCL35Contig5 2.02 1.99 AT4G27410
 Sodium-inducible calcium-binding protein (ACP1) aCL1345Contig2 1.75 3.97 AT5G49480
 Vacuolar processing enzyme γ aCL554Contig1 1.62 2.11 AT4G32940
 Peptidase U7 family protein (SPPA) aCL27Contig1 1.84 1.66 AT1G73990
 Putative Ser/Thr kinase SRK2F aC04002A03SK_c 1.61 1.76 AT4G40010
 Ser-Thr protein kinase aCL5546Contig1 1.62 1.75 AT2G40270
Cellular component organization and biogenesis
 Eukaryotic translation initiation factor SUI1 aCL1184Contig4 1.99 1.78 AT5G54940
 FAD-binding domain-containing protein aCL246Contig1 4.10 2.43 AT2G34790
 Heavy metal-associated domain-containing protein aCL2730Contig1 2.21 1.67 AT4G08570
 Histone H1-3 (HIS1-3) aCL517Contig2 2.62 1.69 AT2G18050
 Peptidase S41 family protein similar to PSII D1 protein-processing enzyme aCL7817Contig1 1.87 2.02 AT3G57680
 Cellulose synthase family protein aCL1355Contig1 1.73 1.82 AT2G32540
Other
 CCR4-associated factor aCL206Contig1 3.26 3.61 AT5G22250
 Strictosidine synthase family protein aC31201B02EF_c 2.09 1.90 AT3G59530
 WD-40 repeat family protein aCL6446Contig1 2.19 1.90 AT1G53090
 DC1 domain-containing protein aCL2160Contig1 1.71 1.78 AT1G60420
 Copper chaperone (CCH) related aCL4708Contig1 1.68 1.90 AT5G63530
Unknown
 3-Oxo-5-α-steroid 4-dehydrogenase family protein aC01011F03SK_c 2.14 2.26 AT5G16010
 Calcium-binding protein (CML4) aCL7914Contig1 2.09 1.71 AT1G21550
 Calmodulin aCL535Contig3 2.85 2.93 AT3G10190
 Calcium-binding EF hand family protein aCL8972Contig1 1.67 1.81 AT1G05150
 Chac-like family protein aCL283Contig1 1.71 1.91 AT4G31290
 Chac-like family protein aC05802B02SK_c 1.87 2.79 AT4G31290
 Esterase/lipase/thioesterase family protein aCL5939Contig1 2.07 1.75 AT1G54570
 Expressed protein aC08031A08SK_c 2.03 2.08 AT5G41110
 Expressed protein aCL8468Contig1 1.87 2.13 AT1G69760
 Expressed protein aCL6840Contig1 2.68 2.26 AT3G52740
 UDP-glucoronosyl/UDP glucosyl transferase family protein aC02002E10SK_c 1.87 2.04 AT3G02100
 UDP-glucoronosyl/UDP-glucosyl transferase family protein aCL5570Contig1 2.85 1.95 AT2G36970
 Remorin-like protein aCL1490Contig1 1.82 1.69 AT2G41870
 ATP-sulfurylase1 (APS1) aCL438Contig2 1.73 1.70 AT3G22890
 No similar protein found aCL8681Contig1 5.08 2.57
 No similar protein found aC08007E01SK_c 4.64 9.66
 No similar protein found aCL50Contig2 3.38 2.56
 No similar protein found aCL1714Contig1 2.44 3.83
 No similar protein found aC03007D01SK_c 2.39 1.87
 No similar protein found aCL101Contig2 2.28 1.65
 No similar protein found aC08007C02SK_c 2.24 1.99
 No similar protein found aC31006C04EF_c 2.13 1.84
 No similar protein found aC31206E07EF_c 2.08 1.86
 No similar protein found aCL4787Contig1 2.06 1.83
 No similar protein found aC31807H02EF_c 2.03 2.09
 No similar protein found aC31305G08EF_c 1.97 1.97
 No similar protein found aC19003E02T7_c 1.90 1.82
 No similar protein found aCL2819Contig1 1.85 2.80
 No similar protein found aC18001E11Rv_c 1.66 1.94
 No similar protein found aC19006C07T7_c 1.61 2.62