Table II. Top 10 genes with the highest VIP score in multiclass classification by PLS-DA.
| MSU Identifier | Annotation | PLS-DA Multiple Stress (VIP component 1) | PLS-DA Abiotic Versus Biotic (VIP component 1) | RF Top 100 (Mean Decrease in Accuracy) | PLS-DA Two-Class (SVM 540) | SVM 540 (Frequency) |
|---|---|---|---|---|---|---|
| LOC_Os01g09620 | Zinc finger/CCCH TF | 2.899 | 2.1512 | 0 | 0 | 0 |
| LOC_Os11g11970 | Expressed protein | 2.8141 | 2.1813 | 0.003567 | 0 | 0 |
| LOC_Os11g26780 | Dehydrin | 2.8021 | 1.6348 | 0.002054 | 2.5939 | 358 |
| LOC_Os07g48020 | POX | 2.7992 | 1.8946 | 0 | 0 | 0 |
| LOC_Os06g24990 | Xylanase inhibitor protein1 | 2.7427 | 2.2645 | 0 | 3.593 | 358 |
| LOC_Os11g32890 | Expressed protein | 2.718 | 1.6966 | 0 | 2.6919 | 358 |
| LOC_Os06g48300 | Protein phosphatase 2C | 2.6559 | 0 | 0 | 2.2334 | 358 |
| LOC_Os10g40040 | Expressed protein | 2.5979 | 0 | 0 | 2.3424 | 358 |
| LOC_Os09g07350 | Fasciclin-like arabinogalactan protein8 | 2.5059 | 0 | 0 | 1.9348 | 358 |
| LOC_Os05g06920 | RelA-SpoT like protein RSH4 | 2.5036 | 2.8245 | 0.004242 | 0 | 0 |