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. 2013 Dec 31;8(12):e83461. doi: 10.1371/journal.pone.0083461

Figure 5. Analysis of the molecular dynamics trajectory obtained after 50 A.

Figure 5

Root mean square deviation (RMSD) plot for the apo TPR receptor (black trace), the Hsp70 C-terminal octapeptide bound form of the receptor (T_70: green trace) and the Hsp90 C-terminal octapeptide bound form of the receptor (T_C90: magenta trace). B. The atomic positional fluctuation (RMSF) plot obtained for each of the above systems. The loop with high B factors in T_C70 is shown with a green arrow.