Table 3. Genome Zipper Statistics: Genes, ESTs, and Associated 454 Reads.
Data Sets | 1R | 2R | 3R | 4R | 5R | 6R | 7R | ∑ |
---|---|---|---|---|---|---|---|---|
No. of SNP markers | 390 | 469 | 381 | 394 | 486 | 398 | 422 | 2,940 |
No. of markers with orthologous gene in reference genome(s) | 224 | 270 | 223 | 215 | 276 | 199 | 236 | 1,643 |
No. of barley fl-cDNAs | 1,386 | 1,663 | 1,567 | 1,437 | 1,697 | 1,370 | 1,713 | 10,833 |
No. of nonredundant sequence reads | 23,720 | 29,907 | 24,948 | 36,818 | 33,671 | 21,436 | 24,304 | 194,804 |
No. of matched rye ESTs | 2,489 | 3,121 | 2,849 | 2,892 | 3,382 | 2,877 | 2,760 | 20,370 |
No. of B. distachyon genes | 1,761 | 2,291 | 2,146 | 1,960 | 2,391 | 1,750 | 1,787 | 14,086 |
No. of rice genes | 1,469 | 2,060 | 1,825 | 1,510 | 1,767 | 1,444 | 1,794 | 11,869 |
No. of sorghum genes | 1,538 | 1,818 | 2,015 | 1,644 | 2,050 | 1,439 | 1,740 | 12,244 |
No. of nonredundant anchored gene loci in genome zipper | 2,806 | 3,595 | 3,201 | 3,299 | 3,751 | 2,693 | 3,081 | 22,426 |