Table 1. Overview of Physical Properties of Plastid Chromosomes in Nonparasitic and Parasitic Orobanchaceae.
Taxon | Size (bp) | Gene Content (Protein-Codinga/tRNAa/rRNAb) | Protein-Coding Regions (%) | Noncoding Regions (%) | Structural RNAs (%) | GC (%)c | GC Protein Coding (%)d | GC Noncoding (%)d | GC Structural RNAs (%)d |
---|---|---|---|---|---|---|---|---|---|
Lindenbergia | 155,103 | 79/30/4 | 51.07 | 41.29 | 7.64 | 37.80 | 38.16 | 33.42 | 54.57 |
Schwalbea | 160,911 | 74/30/4 | 50.82 | 41.81 | 7.36 | 38.08 | 38.82 | 33.73 | 54.31 |
Epifagus | 70,028 | 21/17/4 | 43.07 | 41.58 | 15.35 | 36.01 | 34.72 | 29.84 | 50.20 |
Conopholis | 45,673 | 21/18/4e | 49.29 | 37.86 | 12.84 | 33.92 | 35.66 | 28.88 | 52.45 |
Cistanche | 94,380 | 27/26/4 | 33.40 | 54.36 | 12.24 | 36.57 | 36.21 | 32.66 | 53.44 |
Boulardia | 80,361 | 26/21/4 | 42.12 | 44.15 | 13.74 | 35.76 | 35.72 | 29.84 | 53.82 |
O. crenata | 87,529 | 32/27/4 | 39.88 | 36.92 | 13.21 | 35.19 | 35.37 | 29.84 | 53.39 |
O. gracilis | 65,535 | 28/25/4e,f | 49.42 | 36.09 | 14.50 | 34.51 | 34.79 | 28.24 | 52.95 |
Myzorrhiza | 120,840 | 42/28f/4f | 36.85 | 53.44 | 9.71 | 36.69 | 37.19 | 32.17 | 53.65 |
P. purpurea | 62,891 | 28/22/4e,g | 50.15 | 39.74 | 10.11 | 31.09 | 34.62 | 24.95 | 51.66 |
P. ramosa | 61,709 | 28/22/4e,g | 43.50 | 46.43 | 10.07 | 32.04 | 34.91 | 26.77 | 52.12 |
Number of unique genes.
Unless mentioned otherwise, rDNA is present in two sets.
GC content of the entire plastid chromosome.
GC content of unique plastome segments (IR region removed where present).
IR loss/loss of one rDNA operon.
One rRNA operon may be nonfunctional.
Partial duplication of rrn16.