Table 2.
Genes associated with the PVL prophage in isolate 07-17048
| Designation | Explanation | Position in contig | Length | Best match |
|---|---|---|---|---|
|
tx_lukF-PV |
Rho-independent terminator of lukF-PV |
89974…90030 |
56 |
MW2-USA400, BA000033.2 [1529274:1529329:r]RC |
|
lukF-PV |
Panton-Valentine leukocidin F |
90081…91059 |
978 |
MW2-USA400, BA000033.2 [1529381:1530358:r]RC |
|
lukS-PV |
Panton-Valentine leukocidin S |
91060…91999 |
939 |
CIGC128, AHVY01000005.1 [221466:222404:r]RC |
|
O80065 |
Putative protein directly upstream of lukS-PV - leader-peptide of lukPV |
92106…92239 |
133 |
CIGC128, AHVY01000005.1 [222512:222644:r]RC |
|
tx_amidase1-phiSLT |
Rho-independent terminator of bacteriophage amidase |
92327…92383 |
56 |
TCH1516, CP000730.1 [1562363:1562418:r]RC |
|
amidase1-phi12 |
Bacteriophage amidase |
92388…93843 |
1455 |
MW2-USA400, BA000033.2 [1531688:1533142:r]RC |
|
holin1-phiL54a |
Bacteriophage holin |
93853…94156 |
303 |
MSSA476, BX571857.1 [1023464:1023766]RC |
|
sprFG |
Small pathogenicity island RNA F and G |
94155…94266 |
211 |
ED98, CP001781.1 [892742:892952:r] |
|
rli28 |
Listeria sRNA rli28 homolog, locus 2 |
94395…94574 |
179 |
MW2-USA400, BA000033.2 [2051199:2051377:r]RC |
|
txpA-phage |
Toxin involved in plasmid maintenance |
94400…94535 |
1662 |
MW2-USA400 BA000033.2[2051171:2051305:r]RC |
|
sea |
Enterotoxin A |
94652…95426 |
774 |
ST772 strain 118, AJGE01000058.1 [57550:58323]RC |
|
minor-phiNM3 |
Bacteriophage minor structural protein |
96751…100537 |
3786 |
TCH70-ST1, ACHH02000016.1 [79909:83694]RC |
|
Q8SDK3-phiNM3 |
Putative bacteriophagal protein |
100552…102037 |
1485 |
ST772 strain 118, AJGE01000058.1 [50939:52423]RC |
|
measure1-phiNM3 |
Bacteriophage tail length tape measure protein |
102033…106578 |
4545 |
04-02981, CP001844.2 [2051791:2056320:r]RC |
|
tailL-CC5 |
Bacteriophage major tail protein |
107488…108133 |
645 |
N315, BA000018.3 [2024201:2024845:r]RC |
|
A0EWZ3 |
Bacteriophage major capsid protein |
109862…111008 |
1146 |
Mu50-VRSA, BA000017.4 [2103511:2104656:r]RC |
|
Q6GF91 |
Putative protease |
111031…111769 |
738 |
A9299, ACKH01000012.1 [7311:8048]RC |
|
portal1-phiNM3 |
Bacteriophage portal protein type 1 |
111752…112940 |
1188 |
Mu50-VRSA, BA000017.4 [2105401:2106588:r]RC |
|
terminase-phiNM3 |
Bacteriophagal terminase |
112955…114617 |
1662 |
Mu50-VRSA, BA000017.4 [2106604:2108265:r]RC |
|
rinB-phiPVL |
Bacteriophage transcript activator B |
116263…116413 |
150 |
TCH1516, CP000730.1 [2111630:2111779:r]RC |
|
dut-phi |
Phage dUTP pyrophosphatase |
117277…117820 |
543 |
MRSA252, BX571856.1 [2152883:2153425:r]RC |
|
sri |
Staphylococcal replication inhibitor |
120465…120624 |
159 |
AP009351.1 [1110173:1110331]RC |
|
istB |
Replicative DNA helicase |
120617…121397 |
780 |
phage, FJ713816.1 [12631:13404]RC and 04–02981, CP001844.2 [886487:887266]RC |
|
Q4ZAK4 |
Putative bacteriophagal protein |
121406…122177 |
771 |
04-02981, CP001844.2 [885707:886477]RC |
|
ssb3-phage |
Putative DNA binding protein |
123346…123898 |
552 |
NCTC8325, CP000253.1 [2065949:2066500:r]RC |
|
DUF2483-phi80a |
Putative bacteriophagal protein |
124707…124929 |
222 |
H19, ACSS01000056.1 [6024:6245:r]RC |
|
ant-phiPV83 |
Bacteriophage antirepressor |
127131…127929 |
798 |
phage, AY508486.1 [26092:26889]RC |
|
repressor-var3 |
Bacteriophage repressor |
128338…129067 |
729 |
phage, AP001553.1 [2342:3070:r] |
| int1-phiPVL01 | Bacteriophage integrase | 131132…132338 | 1206 | ST772 strain 118, AJGE01000058.1 [20637:21842:r] |