Table 3.
Potential candidate genes for artemisinin biosynthesis
| Annotation | Contig | Sum normalized counts of filamentous trichomes | Sum normalized counts of glandular trichomes | Log 2 fold change | Adjusted p-value |
|---|---|---|---|---|---|
|
Cytochromes |
|
|
|
|
|
| CYP81 |
comp69_c0_seq1_1 |
1302 |
77238 |
5.9E + 00 |
8.2E-05 |
| CYP82 |
comp548_c0_seq1_1 |
106 |
4142 |
5.2E + 00 |
3.5E-03 |
| |
comp548_c0_seq2_1 |
128 |
3547 |
4.8E + 00 |
5.0E-02 |
| |
sum |
234 |
7689 |
|
|
| CYP76B1 |
comp15043_c0_seq2_1 |
0 |
233 |
3.2E + 01 |
4.6E-02 |
| CYP450 |
comp3673_c0_seq1_1 |
18 |
1368 |
6.4E + 00 |
2.4E-02 |
| cytochrome c-type |
comp586_c0_seq1_1 |
28 |
3002 |
6.4E + 00 |
1.3E-03 |
| |
comp586_c0_seq3_1 |
26 |
4256 |
7.4E + 00 |
3.5E-05 |
| |
comp586_c0_seq4_1 |
0 |
106 |
3.1E + 01 |
2.5E-02 |
| |
sum |
54 |
7364 |
|
|
|
Peroxidases |
|
|
|
|
|
| Peroxidase |
comp252_c0_seq1_1 |
95 |
4240 |
5.5E + 00 |
9.1E-03 |
| |
comp252_c0_seq3_1 |
22 |
994 |
5.5E + 00 |
1.3E-02 |
| |
comp252_c0_seq4_1 |
83 |
6515 |
6.3E + 00 |
4.5E-03 |
| |
comp252_c0_seq5_1 |
9 |
877 |
6.8E + 00 |
1.4E-02 |
| |
sum |
208 |
12625 |
|
|
| Peroxidase 49 |
comp2084_c0_seq1_1 |
145 |
2649 |
4.3E + 00 |
3.0E-02 |
| Gluthatione peroxidase |
comp6217_c0_seq4_1 |
0 |
75 |
3.0E + 01 |
4.5E-02 |
|
Dioxygenases |
|
|
|
|
|
| Flavanone 3-hydroxylase |
comp225_c0_seq1_1 |
1507 |
20326 |
3.8E + 00 |
1.0E-02 |
| Flavanone 3-hydroxylase | comp453_c0_seq1_1 | 706 | 16165 | 4.5E + 00 | 1.3E-02 |
Potential candidate cytochromes, peroxidases and dioxygenases with a significantly higher expression level in glandular trichomes. The normalized counts of 6 samples with filamentous trichomes are summed and compared with 6 glandular trichome samples. Log2-fold changes are given as well as adjusted p-values.