TABLE 2.

Oligonucleotide sequences

Oligonucleotide	Nucleotide sequence	Gene or DNA region
OFN1	5′-GGAATACCAGTCGGAGGCGGGAT-3′	cupAS-lacZ
OFN65	5′-CCATAGTCGGAAATACAAGCGTTG-3′	cupAL-lacZ
OFN2	5′-GCTGAATGTGATAGTGTTTGCCG-3′	cupAS and L-lacZ
M1	5′-CCACCGCCACTCAGCACAGACAAGG-3′	mvaT
M2	5′-CGCTATTCGCTGGAGACTTGAGGGC-3′	mvaT
OTn1	5′-GCGCGGATCCTGGAAAACGGGAAAG-3′	Tn5G
OTn2	5′-CCATCTCATCAGAGGGTAGT-3′	Tn5G
MA1O1	5′-GGCAAACACTATCACATTCAGCGG-3′	cupA1 (A1 probe)
MA1O2	5′-GGCGGCGGTGTTCACCAGGTTCCC-3′	cupA1 (A1 probe)
NB1O1	5′-TCGTCAACTTCTCGGGCAACATCAC-3′	cupB1 (B1 probe)
NB1O2	5′-CAGCGGGATCTTCGTGGTGTTGGTC-3′	cupB1 (B1 probe)
NC1O1	5′-CAGACGGCACCATCAATTTCAAAGG-3′	cupC1 (C1 probe)
NC1O2	5′-ATAGATGCCAATACCGACGCCAGTG-3′	cupC1 (C1 probe)
NA2O1	5′-CGGGCAAGCGTGGTGGTGACCG-3′	cupA2 (A2 probe)
NA2O2	5′-TTGTCCACCCGCACCGCCCAGC-3′	cupA2 (A2 probe)
NA3O1	5′-TCCAACTACACCTATTCCCGCTAC-3′	cupA3 (A3 probe)
NA3O2	5′-CCGTCGTAGAAATCGCTGGAGGAG-3′	cupA3 (A3 probe)
NA4O1	5′-GGGACGCCGTCTACGAGATGTTTTC-3′	cupA4 (A4 probe)
NA4O2	5′-TGTAGGAATAGGGCTGVGAGAGGAT-3′	cupA4 (A4 probe)
NA5O1	5′-CTGCCGCCCGTATTCCGCCTGG-3′	cupA5 (A5 probe)
NA5O2	5′-AGTACGGCGTCGGGTTGTCCAC-3′	cupA5 (A5 probe)
NB3O1	5′-CCTGTCTGCTGGCACTGTTTC-3′	cupB3 (B3 probe)
NB3O2	5′-AATAGCTGGGCACCGAGACATA-3′	cupB3 (B3 probe)
NC3O1	5′-AGGTGTCCGTCTATTCCAGGT-3′	cupC3 (C3 probe)
NC3O2	5′-GGTACGGTTGCTACTGAACTTG-3′	cupC3 (C3 probe)
4648O1	5′-GCAGCCATTCCGACCTCACCAACG-3′	PA4648 probe
4648O2	5′-CGTCGGCGTGGGTGTGCTTTGTCC-3′	PA4648 probe
4651O1	5′-ACCTACCTCTCCGCCCCAGCCGCT-3′	PA4651 probe
4651O2	5′-CCTGTTCCTCGACCAGCCGCCAGG-3′	PA4651 probe
Pil1	5′-ACCCGCTGAAGACCACTGTTGAAGA-3′	pilA probe
Pil2	5′-ATTTACAAGCCCAGACCCCATCCGC-3′	pilA probe
mvaUUF	5′-CGGCTGGATCCGCGACTTCGCGGAAAT-3′	Upstream mvaU
mvaUDR	5′-GACGCCTGCAGTTCGGCTCCCCGGCC-3′	Downstream mvaU
mvaUUR	5′-TGCCTCGCGGAACTGTGCACGTTTGGACAT-3′	Upstream mvaU
mvaUDF	5′-ACCGTCGAATCCTGGGTGCACCGCTAAGCCG-3′	Downstream mvaU