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. 2013 Dec 18;6:57. doi: 10.1186/1755-8794-6-57

Table 1.

Validation results of each dataset and integration of 5 data sources

 
 Artificial linkage interval
 Random control
 Whole genome
  TOP AUC FE MRR TOP AUC FE MRR TOP AUC FE MRR
ALL (Lasso)
 Leave one out
 62.47%
 90.86%
 68.09
 8.90%
 57.42%
 90.78%
 57.42
 8.34%
 29.34%
 90.21%
 2616.84
 7.57%
Ab initio
 61.48%
 90.61%
 67.01
 10.98%
 56.58%
 90.49%
 56.58
 8.87%
 27.87%
 89.16%
 2484.89
 8.09%
ALL (Regular)
 Leave one out
 56.96%
 89.92%
 64.25
 11.20%
 53.69%
 90.24%
 53.69
 9.98%
 24.16%
 89.01%
 2154.80
 8.72%
Ab initio
 55.47%
 89.52%
 63.74
 11.60%
 52.64%
 90.02%
 52.64
 9.65%
 23.11%
 88.16%
 2061.20
 9.22%
PPI
 Leave one out
 47.41%
 86.08%
 51.66
 16.94%
 42.07%
 82.23%
 42.07
 18.05%
 9.87%
 79.78%
 880.31
 19.46%
Ab initio
 44.82%
 84.45%
 48.85
 17.95%
 39.29%
 80.02%
 39.29
 20.29%
 9.16%
 79.05%
 816.98
 20.08%
KEGG
 Leave one out
 42.16%
 76.02%
 46.20
 16.36%
 35.89%
 73.12%
 35.89
 19.50%
 11.48%
 62.38%
 1023.90
 12.93%
Ab initio
 41.02%
 75.19%
 44.91
 16.52%
 34.20%
 71.31%
 34.20
 20.10%
 11.20%
 62.20%
 998.93
 13.01%
GS
 Leave one out
 40.34%
 79.08%
 43.97
 18.59%
 40.20%
 74.07%
 40.20
 15.80%
 10.64%
 67.26%
 948.98
 15.09%
Ab initio
 40.27%
 78.69%
 43.89
 18.80%
 38.45%
 72.73%
 38.45
 16.40%
 10.31%
 66.03%
 919.55
 15.65%
GE
 Leave one out
 23.25%
 74.30%
 25.34
 31.15%
 17.44%
 69.04%
 17.44
 29.51%
 1.75%
 67.61%
 156.08
 28.79%
Ab initio
 22.97%
 74.03%
 25.04
 31.48%
 16.53%
 68.60%
 16.53
 29.94%
 1.47%
 67.12%
 131.11
 29.21%
GO Leave one out
 24.65%
 76.99%
 26.86
 24.94%
 20.24%
 69.18%
 22.24
 23.51%
 8.05%
 61.74%
 717.98
 22.63%
Ab initio 24.00% 76.81% 26.16 25.08% 20.10% 68.89% 20.13 23.71% 7.47% 61.44% 666.25 22.95%