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. 2013 Dec 16;14:881. doi: 10.1186/1471-2164-14-881

Table 2.

Sequencing primers

Amplicon number Primer name Sequence Source
1
F402
ATCTTTTGGCGGTATGCACTTT
New
F619
TTAGACGGGCTCACATCACC
[19]
R878
CCAACCCTGGGGTTAGTATAGC
New
F900
CGGTCACACGATTAACCCAAG
New
F1135
CCAGAACACTACGAGCCACA
New
R1136
GGCGAGCAGTTTTGTTGATT
New
F1320
GACGTTAGGTCAAGGTGTAGCC
New
R1365
TAGCCCATTTCTTGCCACCT
New
F1657
CTTGACCGCTCTGAGCTAAAC
[16,17]
R1769
GCCAGGTTTCAATTTCTATCG
[16,17]
R1924
AGGTAGCTCGTCTGGTTTCG
New
F1983
TAGAGGCGACAAACCTACCG
New
F2105
GAGGAACAGCTCTTTGGACAC
[16,17]
R2216
TGTTGAGCTTGAACGCTTTCTT
New
F2333
GCATAAGCCTGCGTCAGAT
New
R2439
ATGCCTGTGTTGGGTTGAC
New
F2506
AACATCACCTCTAGCATCACCA
New
R2818
GCCCCAACCGAAATTTTTAAT
New
2
F2625
CTGTATGAATGGCTCCACGAG
New
F2932
GGGATAACAGCGCAATCCTAT
New
R3006
ATGTCCTGATCCAACATCGAG
[16,17]
F3241
AGAGCCCGGTAATCGCATAA
New
R3417
GGGGCCTTTGCGTAGTTGTA
New
F3441
ACTACAACCCTTCGCTGACG
[16,17]
R3632
GAGGTGGCTAGAATAAATAGGAGGC
New
F3635
GCCTAGCCGTTTACTCAATCC
[16,17]
R3825
TCAGAGGTGTTCTTGTGTTGTGAT
New
F3890
GAACCCCCTTCGACCTTG
New
R4162
TGAGTTGGTCGTAGCGGAATC
[16,17]
F4142
GATTCCGCTACGACCAACT
New
F4392
CCCATCCTAAAGTAAGGTCAGC
[16,17]
R4479
GGGGATTAATTAGTACGGGAAGG
New
R4676
GATTATGGATGCGGTTGCTT
New
R4811
TCAGAAGTGAAAGGGGGCTAT
New
3
F4609
AAATAAACCCTCGTTCCACAGA
New
F4925
CCTTCTCCTCACTCTCTCAATC
New
R5034
ATCCTATGTGGGTAATTGAGGA
New
F5150
CCTACTACTATCTCGCACCTGAA
New
R5210
GGTGGATGGAATTAAGGGTGT
New
F5318
CACCATCACCCTCCTTAACC
[16,17]
R5325
TGATGGTGGCTATGATGGTG
New
R5681
GTGGGTTTAAGTCCCATTGGT
New
F5664
AATGGGACTTAAACCCACAAA
New
F5858
TTTACAGTCCAATGCTTCACTC
New
R5799
TGCAAATTCGAAGAAGCAG
New
R5994
TGCCTAGGACTCCAGCTCAT
[19]
F6032
GCCAGGCAACCTTCTAGGTA
New
F6318
CCTGGAGCCTCCGTAGACCT
New
R6444
TTTGGTATTGGGTTATGGCAG
New
F6496
CTCTCCCAGTCCTAGCTGCTG
New
R6899
CATATTGCTTCCGTGGAGTGTG
New
4
F6636
ATTCTTATCCTACCAGGCTTCG
New
F7075
GTATGGGGATAAGGGGTGTA
[16,17]
R7248
TGGTGTATGCATCGGGGTAGT
New
F7366
CCTCCATAAACCTGGAGTGA
New
R7489
TGGCTTGAAACCAGCTTTG
[19]
F7527
GAAAAACCATTTCATAACTTTGTCA
New
R7766
TTTCCTGAGCGTCTGAGATGT
New
F7821
CATCCCTACGCATCCTTTACAT
New
F8129
ACCACTTTCACCGCTACACG
New
R8141
CGGTGAAAGTGGTTTGGTTTA
New
F8355
TTTACAGTGAAATGCCCCAAC
New
R8378
TTAGTTGGGGCATTTCACTGT
New
R8640
GATGAGATATTTGGAGGTGGG
New
F8668
TGACTAATCAAACTAACCTCAAAACA
New
F8717
AAGGACGAACCTGATCTCTTATACT
New
R8949
TAGTATGGGGATAAGGGGTGTA
New
R9031
GGTGGCCTGCAGTAATGTTAG
New
5
F8940
CCCCATACTAGTTATTATCGAAACC
New
F9272
CTCAGCCCTCCTAATGACCTC
New
R9376
CATTGGTATATGGTTAGTGTGTTGG
New
F9483
TTCTTCGCAGGATTTTTCTGA
New
R9611
GGATGTGTTTAGGAGTGGGACT
New
R9853
GTGAGGAAAGTTGAGCCAATAA
New
F9832
TTATTGGCTCAACTTTCCTCAC
New
R10171
TAGAAAAATCCACCCCTTACGA
New
F10267
CCCTCCTTTTACCCCTACCAT
New
R10294
AGGGCTCATGGTAGGGGTAA
New
F10419
AACAAAACGAATGATTTCGACTC
New
F10689
GGCCTAGCCCTACTAGTCTCAA
New
R10715
CGTAGTCTAGGCCATATGTGTTG
[19]
R10942
TAGGGGGTCGGAGGAAAAG
New
F10950
CCCTCCTAATACTAACTACCTGACTC
New
R11166
CATCGGGTGATGATAGCCAAG
[16,17]
R11428
GGCTTCGACATGGGCTTT
New
6
F11319
CAAACTCCTGAGCCAACAACTT
New
F11760
ACGAACGCACTCACAGTCG
[16,17]
R11768
TGCGTTCGTAGTTTGAGTTTG
New
R11804
GAAGTCCTTGAGAGAGGATTATGA
New
F11964
TCACAGCCCTATACTCCCTCT
New
R12089
TGGGGGATAGGTGTATGAACA
New
F12194
CCCCTTATTTACCGAGAAAGC
New
R12302
GCCTAAGACCAATGGATAGCT
New
F12452
TTGTCGCATCCACCTTTATT
New
F12741
CAACCTATTCCAACTGTTCATCG
New
R12766
AGCCGATGAACAGTTGGAATA
New
R13025
TGGAGACCTAATTGGGCTGA
New
F13203
AGTCTGCGCCCTTACACAAA
New
R13390
TGTTAAGGTTGTGGATGATGGA
New
R13559
GCTCAGGCGTTTGTGTATGAT
New
F13628
CTAACAGGTCAACCTCGCTTC
New
R13855
GGTAGTTGAGGTCTAGGGCTGTT
New
R13924
GGTAGAATCCGAGTATGTTGGAG
New
7
F13835
CAGCCCTAGACCTCAACTACC
New
F14058
CATCATCACCTCAACCCAAA
New
R14118
TGGGAAGAAGAAAGAGAGGAAG
[16,17]
F14431
TGCCTCAGGATACTCCTCAAT
New
R14448
GAGGAGTATCCTGAGGCATGG
New
F14641
ACCCACACTCAACAGAAACAAA
New
R14721
CGATGGTTTTTCATATCATTGG
New
F14881
CACCACAGGACTATTCCTAGCC
New
R14902
GGCTAGGAATAGTCCTGTGGTG
New
F15190
CTTACTATCCGCCATCCCATA
New
R15396
TTATCGGAATGGGAGGTGATTC
[16,17]
F15500
GACCCAGACAATTATACCCTAGCC
New
R15585
ATTGTGTAGGCGAATAGGAAATA
New
F15699
GCCCACTAAGCCAATCACTT
[19]
R15728
GGAGTCAATAAAGTGATTGGCTTAG
New
R16042
CTGCTTCCCCATGAAAGAAC
[19]
8 F15971
TTAACTCCACCATTAGCACC
[13]
F16190
CCCCATGCTTACAAGCAAGT
[13]
F155
TATTTATCGCACCTACGTTC
[13]
F314
CCGCTTCTGGCCACAGCACT
[13]
R16410
GAGGATGGTGGTCAAGGGA
[13]
R285
GTTATGATGTCTGTGTGGAA
[13]
R484
TGAGATTAGTAGTATGGGAG
[13]
R599 TTGAGGAGGTAAGCTACATA [13]

Sequencing primers for the complete mtGenome, with sources (new or previously published). All primers for Amplicon 8, which covers the mtDNA CR, were adopted from [13]; these are used in duplicate to produce a total of sixteen sequences for the CR. Most amplification primers are also utilized as sequencing primers (see Table 1).