Table 2.
Sequencing primers
| Amplicon number | Primer name | Sequence | Source |
|---|---|---|---|
|
1 |
F402 |
ATCTTTTGGCGGTATGCACTTT |
New |
| F619 |
TTAGACGGGCTCACATCACC |
[19] |
|
| R878 |
CCAACCCTGGGGTTAGTATAGC |
New |
|
| F900 |
CGGTCACACGATTAACCCAAG |
New |
|
| F1135 |
CCAGAACACTACGAGCCACA |
New |
|
| R1136 |
GGCGAGCAGTTTTGTTGATT |
New |
|
| F1320 |
GACGTTAGGTCAAGGTGTAGCC |
New |
|
| R1365 |
TAGCCCATTTCTTGCCACCT |
New |
|
| F1657 |
CTTGACCGCTCTGAGCTAAAC |
[16,17] |
|
| R1769 |
GCCAGGTTTCAATTTCTATCG |
[16,17] |
|
| R1924 |
AGGTAGCTCGTCTGGTTTCG |
New |
|
| F1983 |
TAGAGGCGACAAACCTACCG |
New |
|
| F2105 |
GAGGAACAGCTCTTTGGACAC |
[16,17] |
|
| R2216 |
TGTTGAGCTTGAACGCTTTCTT |
New |
|
| F2333 |
GCATAAGCCTGCGTCAGAT |
New |
|
| R2439 |
ATGCCTGTGTTGGGTTGAC |
New |
|
| F2506 |
AACATCACCTCTAGCATCACCA |
New |
|
| R2818 |
GCCCCAACCGAAATTTTTAAT |
New |
|
|
2 |
F2625 |
CTGTATGAATGGCTCCACGAG |
New |
| F2932 |
GGGATAACAGCGCAATCCTAT |
New |
|
| R3006 |
ATGTCCTGATCCAACATCGAG |
[16,17] |
|
| F3241 |
AGAGCCCGGTAATCGCATAA |
New |
|
| R3417 |
GGGGCCTTTGCGTAGTTGTA |
New |
|
| F3441 |
ACTACAACCCTTCGCTGACG |
[16,17] |
|
| R3632 |
GAGGTGGCTAGAATAAATAGGAGGC |
New |
|
| F3635 |
GCCTAGCCGTTTACTCAATCC |
[16,17] |
|
| R3825 |
TCAGAGGTGTTCTTGTGTTGTGAT |
New |
|
| F3890 |
GAACCCCCTTCGACCTTG |
New |
|
| R4162 |
TGAGTTGGTCGTAGCGGAATC |
[16,17] |
|
| F4142 |
GATTCCGCTACGACCAACT |
New |
|
| F4392 |
CCCATCCTAAAGTAAGGTCAGC |
[16,17] |
|
| R4479 |
GGGGATTAATTAGTACGGGAAGG |
New |
|
| R4676 |
GATTATGGATGCGGTTGCTT |
New |
|
| R4811 |
TCAGAAGTGAAAGGGGGCTAT |
New |
|
|
3 |
F4609 |
AAATAAACCCTCGTTCCACAGA |
New |
| F4925 |
CCTTCTCCTCACTCTCTCAATC |
New |
|
| R5034 |
ATCCTATGTGGGTAATTGAGGA |
New |
|
| F5150 |
CCTACTACTATCTCGCACCTGAA |
New |
|
| R5210 |
GGTGGATGGAATTAAGGGTGT |
New |
|
| F5318 |
CACCATCACCCTCCTTAACC |
[16,17] |
|
| R5325 |
TGATGGTGGCTATGATGGTG |
New |
|
| R5681 |
GTGGGTTTAAGTCCCATTGGT |
New |
|
| F5664 |
AATGGGACTTAAACCCACAAA |
New |
|
| F5858 |
TTTACAGTCCAATGCTTCACTC |
New |
|
| R5799 |
TGCAAATTCGAAGAAGCAG |
New |
|
| R5994 |
TGCCTAGGACTCCAGCTCAT |
[19] |
|
| F6032 |
GCCAGGCAACCTTCTAGGTA |
New |
|
| F6318 |
CCTGGAGCCTCCGTAGACCT |
New |
|
| R6444 |
TTTGGTATTGGGTTATGGCAG |
New |
|
| F6496 |
CTCTCCCAGTCCTAGCTGCTG |
New |
|
| R6899 |
CATATTGCTTCCGTGGAGTGTG |
New |
|
|
4 |
F6636 |
ATTCTTATCCTACCAGGCTTCG |
New |
| F7075 |
GTATGGGGATAAGGGGTGTA |
[16,17] |
|
| R7248 |
TGGTGTATGCATCGGGGTAGT |
New |
|
| F7366 |
CCTCCATAAACCTGGAGTGA |
New |
|
| R7489 |
TGGCTTGAAACCAGCTTTG |
[19] |
|
| F7527 |
GAAAAACCATTTCATAACTTTGTCA |
New |
|
| R7766 |
TTTCCTGAGCGTCTGAGATGT |
New |
|
| F7821 |
CATCCCTACGCATCCTTTACAT |
New |
|
| F8129 |
ACCACTTTCACCGCTACACG |
New |
|
| R8141 |
CGGTGAAAGTGGTTTGGTTTA |
New |
|
| F8355 |
TTTACAGTGAAATGCCCCAAC |
New |
|
| R8378 |
TTAGTTGGGGCATTTCACTGT |
New |
|
| R8640 |
GATGAGATATTTGGAGGTGGG |
New |
|
| F8668 |
TGACTAATCAAACTAACCTCAAAACA |
New |
|
| F8717 |
AAGGACGAACCTGATCTCTTATACT |
New |
|
| R8949 |
TAGTATGGGGATAAGGGGTGTA |
New |
|
| R9031 |
GGTGGCCTGCAGTAATGTTAG |
New |
|
|
5 |
F8940 |
CCCCATACTAGTTATTATCGAAACC |
New |
| F9272 |
CTCAGCCCTCCTAATGACCTC |
New |
|
| R9376 |
CATTGGTATATGGTTAGTGTGTTGG |
New |
|
| F9483 |
TTCTTCGCAGGATTTTTCTGA |
New |
|
| R9611 |
GGATGTGTTTAGGAGTGGGACT |
New |
|
| R9853 |
GTGAGGAAAGTTGAGCCAATAA |
New |
|
| F9832 |
TTATTGGCTCAACTTTCCTCAC |
New |
|
|
R10171 |
TAGAAAAATCCACCCCTTACGA |
New |
|
|
F10267 |
CCCTCCTTTTACCCCTACCAT |
New |
|
|
R10294 |
AGGGCTCATGGTAGGGGTAA |
New |
|
|
F10419 |
AACAAAACGAATGATTTCGACTC |
New |
|
|
F10689 |
GGCCTAGCCCTACTAGTCTCAA |
New |
|
|
R10715 |
CGTAGTCTAGGCCATATGTGTTG |
[19] |
|
|
R10942 |
TAGGGGGTCGGAGGAAAAG |
New |
|
|
F10950 |
CCCTCCTAATACTAACTACCTGACTC |
New |
|
|
R11166 |
CATCGGGTGATGATAGCCAAG |
[16,17] |
|
|
R11428 |
GGCTTCGACATGGGCTTT |
New |
|
|
6 |
F11319 |
CAAACTCCTGAGCCAACAACTT |
New |
|
F11760 |
ACGAACGCACTCACAGTCG |
[16,17] |
|
|
R11768 |
TGCGTTCGTAGTTTGAGTTTG |
New |
|
|
R11804 |
GAAGTCCTTGAGAGAGGATTATGA |
New |
|
|
F11964 |
TCACAGCCCTATACTCCCTCT |
New |
|
|
R12089 |
TGGGGGATAGGTGTATGAACA |
New |
|
|
F12194 |
CCCCTTATTTACCGAGAAAGC |
New |
|
|
R12302 |
GCCTAAGACCAATGGATAGCT |
New |
|
|
F12452 |
TTGTCGCATCCACCTTTATT |
New |
|
|
F12741 |
CAACCTATTCCAACTGTTCATCG |
New |
|
|
R12766 |
AGCCGATGAACAGTTGGAATA |
New |
|
|
R13025 |
TGGAGACCTAATTGGGCTGA |
New |
|
|
F13203 |
AGTCTGCGCCCTTACACAAA |
New |
|
|
R13390 |
TGTTAAGGTTGTGGATGATGGA |
New |
|
|
R13559 |
GCTCAGGCGTTTGTGTATGAT |
New |
|
|
F13628 |
CTAACAGGTCAACCTCGCTTC |
New |
|
|
R13855 |
GGTAGTTGAGGTCTAGGGCTGTT |
New |
|
|
R13924 |
GGTAGAATCCGAGTATGTTGGAG |
New |
|
|
7 |
F13835 |
CAGCCCTAGACCTCAACTACC |
New |
|
F14058 |
CATCATCACCTCAACCCAAA |
New |
|
|
R14118 |
TGGGAAGAAGAAAGAGAGGAAG |
[16,17] |
|
|
F14431 |
TGCCTCAGGATACTCCTCAAT |
New |
|
|
R14448 |
GAGGAGTATCCTGAGGCATGG |
New |
|
|
F14641 |
ACCCACACTCAACAGAAACAAA |
New |
|
|
R14721 |
CGATGGTTTTTCATATCATTGG |
New |
|
|
F14881 |
CACCACAGGACTATTCCTAGCC |
New |
|
|
R14902 |
GGCTAGGAATAGTCCTGTGGTG |
New |
|
|
F15190 |
CTTACTATCCGCCATCCCATA |
New |
|
|
R15396 |
TTATCGGAATGGGAGGTGATTC |
[16,17] |
|
|
F15500 |
GACCCAGACAATTATACCCTAGCC |
New |
|
|
R15585 |
ATTGTGTAGGCGAATAGGAAATA |
New |
|
|
F15699 |
GCCCACTAAGCCAATCACTT |
[19] |
|
|
R15728 |
GGAGTCAATAAAGTGATTGGCTTAG |
New |
|
|
R16042 |
CTGCTTCCCCATGAAAGAAC |
[19] |
|
| 8 |
F15971 |
TTAACTCCACCATTAGCACC |
[13] |
|
F16190 |
CCCCATGCTTACAAGCAAGT |
[13] |
|
| F155 |
TATTTATCGCACCTACGTTC |
[13] |
|
| F314 |
CCGCTTCTGGCCACAGCACT |
[13] |
|
|
R16410 |
GAGGATGGTGGTCAAGGGA |
[13] |
|
| R285 |
GTTATGATGTCTGTGTGGAA |
[13] |
|
| R484 |
TGAGATTAGTAGTATGGGAG |
[13] |
|
| R599 | TTGAGGAGGTAAGCTACATA | [13] |
Sequencing primers for the complete mtGenome, with sources (new or previously published). All primers for Amplicon 8, which covers the mtDNA CR, were adopted from [13]; these are used in duplicate to produce a total of sixteen sequences for the CR. Most amplification primers are also utilized as sequencing primers (see Table 1).