Table 1.
Commonly regulated GO terms in leaf and root of rice
| Up In L and R | Leaf | Root |
|---|---|---|
| GO:0006950_response to stress | 0.0054 | 0.0006 |
| GO:0050896_response to stimulus | 0 | 0.0006 |
| GO:0042221_response to chemical stimulus | 0 | 0.0049 |
| GO:0009628_response to abiotic stimulus | 0.0047 | 0.0009 |
| GO:0009408_response to heat | 0 | 0 |
| GO:0009266_response to temperature stimulus | 0 | 0 |
| GO:0009808_lignin metabolic process | 0.0017 | 0.0351 |
| GO:0009644_response to high light intensity | 0.029 | 0 |
| GO:0006720_isoprenoid metabolic process | 0.0358 | 0.0341 |
| GO:0009719_response to endogenous stimulus | 0.0361 | 0.0296 |
| GO:0009725_response to hormone stimulus | 0.0359 | 0.0122 |
| GO:0009642_response to light intensity | 0.0493 | 0 |
| Down in L and R | Leaf | Root |
| GO:0006468_protein amino acid phosphorylation | 0 | 0 |
| GO:0048544_recognition or rejection of self pollen | 0 | 0 |
| GO:0009875_pollen-pistil interaction | 0 | 0 |
| GO:0008037_cell recognition | 0 | 0 |
| GO:0016310_phosphorylation | 0 | 0 |
| GO:0006950_response to stress | 0.0003 | 0 |
| GO:0044237_cellular metabolic process | 0.0017 | 0 |
| GO:0006259_DNA metabolic process | 0.0022 | 0 |
| GO:0042254_ribosome biogenesis | 0.037 | 0 |
| GO:0050896_response to stimulus | 0 | 0 |
| GO:0034470_ncRNA processing | 0 | 0 |
| GO:0043412_biopolymer modification | 0 | 0 |
| GO:0043687_post-translational protein modification | 0 | 0 |
| GO:0006464_protein modification process | 0 | 0 |
| GO:0006793_phosphorus metabolic process | 0 | 0 |
| GO:0006796_phosphate metabolic process | 0 | 0 |
| GO:0008152_metabolic process | 0.0113 | 0 |
| GO:0016072_rRNA metabolic process | 0.0117 | 0 |
| GO:0006261_DNA-dependent DNA replication | 0.0022 | 0 |
| GO:0006364_rRNA processing | 0.013 | 0.0008 |
| GO:0006952_defense response | 0 | 0 |
| GO:0051704_multi-organism process | 0.0055 | 0 |
| GO:0007166_cell surface receptor linked signal transduction | 0.0054 | 0 |
| GO:0008283_cell proliferation | 0.0023 | 0.0062 |
| GO:0007169_transmembrane receptor protein tyrosine kinase signaling pathway | 0.002 | 0 |
| GO:0009856_pollination | 0 | 0 |
| GO:0007167_enzyme linked receptor protein signaling pathway | 0.0022 | 0 |
| GO:0006270_DNA replication initiation | 0.0378 | 0.0032 |
| GO:0006396_RNA processing | 0 | 0.021 |
| GO:0043283_biopolymer metabolic process | 0.0054 | 0.0176 |
| GO:0016481_negative regulation of transcription | 0.0127 | 0.022 |
| GO:0010629_negative regulation of gene expression | 0.0185 | 0.0234 |
| GO:0009890_negative regulation of biosynthetic process | 0.0185 | 0.0443 |
| GO:0010558_negative regulation of macromolecule biosynthetic process | 0.0277 | 0.0376 |
| GO:0010605_negative regulation of macromolecule metabolic process | 0.0285 | 0.0484 |
Numbers shown are minimum FDR value among the whole set of different time point’s value of each GO term.