Table 5.
Psorophora albipes polymorphisms detected on a set of 1,100 coding sequences of 16 functional classes
| Class | Average (Syn /Codon) x 100 1 | SE | Average (NS /codon) x 100 2 | SE | NS/Syn | Average coverage 3 | SE | N |
|---|---|---|---|---|---|---|---|---|
| Nuclear regulation |
1.4343 |
0.5854 |
0.0217 |
0.0207 |
0.0152 |
278.6 |
48.3 |
11 |
| Protein synthesis |
0.4095 |
0.1637 |
0.0885 |
0.0389 |
0.2161 |
2981.7 |
243.9 |
96 |
| Protein export |
1.2332 |
0.1954 |
0.1188 |
0.0491 |
0.0963 |
340.0 |
34.0 |
65 |
| Cytoskeletal |
0.9455 |
0.1606 |
0.1271 |
0.0722 |
0.1344 |
322.5 |
48.0 |
54 |
| Proteasome |
2.6511 |
0.4884 |
0.1487 |
0.0550 |
0.0561 |
189.0 |
20.4 |
35 |
| Transcription |
1.1524 |
0.2376 |
0.1531 |
0.0785 |
0.1329 |
410.2 |
99.3 |
47 |
| Signal transduction |
1.0220 |
0.1283 |
0.1604 |
0.0385 |
0.1570 |
365.9 |
69.9 |
143 |
| Transporters |
1.6399 |
0.3186 |
0.1997 |
0.0638 |
0.1218 |
400.2 |
61.0 |
89 |
| Detoxification |
1.5145 |
0.3318 |
0.2194 |
0.0739 |
0.1448 |
198.5 |
31.2 |
16 |
| Transcription factor |
0.9573 |
0.3958 |
0.2243 |
0.1351 |
0.2343 |
237.2 |
30.2 |
12 |
| Immunity |
2.4690 |
0.9928 |
0.2398 |
0.1077 |
0.0971 |
224.7 |
47.6 |
11 |
| Protein modification |
1.1421 |
0.2421 |
0.2514 |
0.0877 |
0.2201 |
370.1 |
86.2 |
56 |
| Metabolism |
1.5898 |
0.1807 |
0.2515 |
0.0447 |
0.1582 |
389.2 |
72.1 |
147 |
| Extracellular matrix |
1.7871 |
0.3776 |
0.3044 |
0.0994 |
0.1703 |
280.6 |
39.9 |
29 |
| Unknown conserved |
1.6564 |
0.1961 |
0.3244 |
0.0626 |
0.1958 |
372.9 |
44.6 |
127 |
| Secreted |
0.5885 |
0.0849 |
0.3308 |
0.0498 |
0.5621 |
2729.7 |
288.8 |
334 |
| Total | 1100 |
1Number of synonymous polymorphism per 100 codons.
2Number of non-synonymous polymorphism per 100 codons.
3Average read coverage of coding sequences.