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. 2013 Dec 13;14:362. doi: 10.1186/1471-2105-14-362

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Copyright © 2013 Giurato et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Graphic representation of iMir pipeline performances. Datasets obtained from smallRNA-Seq analysis in exponentially growing (sample A) or growth-arrested (sample B) MCF-7 cells, performed in triplicate as described in the text, were input in iMir and analyzed with the standard, complete analytical workflow of the tool. The processing time of each module are highlighted in yellow and the graphic outputs of Modules 1 (histograms showing sequence read length distribution in each replicate) and 5 (heat-map visualization of sncRNA profile differences among samples and pie-chart summarizing the results of the differential expression analysis) are shown to their right.