Table 1.
Number of reads before and after adapter cleavage and reads mapped in each sncRNA library included in iMir
| MCF-7 cells | Raw reads | Reads after adapter Cleavage | miRNA reads | tRNA reads | rRNA reads | mRNA reads | piRNA reads | Remaining reads mapping on the genome | Reads not assigned | |
|---|---|---|---|---|---|---|---|---|---|---|
| Exponentially growing |
Replicate 1 |
4,327,501 |
4,068,141 |
2,310,200 |
16,989 |
91,040 |
391,750 |
15,753 |
597,037 |
69,516 |
| |
Replicate 2 |
4,337,535 |
4,075,320 |
2,314,040 |
17,042 |
92,178 |
404,148 |
16,438 |
614,614 |
70,165 |
| |
Replicate 3 |
4,354,046 |
4,091,633 |
2,374,218 |
17,737 |
94,961 |
420,175 |
16,949 |
636,708 |
71,737 |
| Growth-arrested |
Replicate 1 |
6,071,484 |
5,844,875 |
4,626,170 |
13,588 |
72,460 |
181,084 |
14,831 |
234,955 |
40,941 |
| |
Replicate 2 |
6,075,950 |
5,846,690 |
4,621,008 |
12,470 |
75,251 |
185,803 |
15,122 |
242,065 |
40,667 |
| Replicate 3 | 6,085,784 | 5,855,090 | 4,725,975 | 12,705 | 77,842 | 192,161 | 15,582 | 249,638 | 41,494 |