Table 2.
Number of known RNAs and of predicted novel miRNAs identified with iMir in replicate smallRNA-Seq datasets from MCF-7 cells
| |
Exponentially growing cells |
Growth-arrested cells |
||||
|---|---|---|---|---|---|---|
| Replicate 1 | Replicate 2 | Replicate 3 | Replicate 1 | Replicate 2 | Replicate 3 | |
| miRNA (miRBase v.20) |
473 |
469 |
476 |
461 |
467 |
473 |
| tRNA (UCSC Genome Browser) |
56 |
56 |
54 |
45 |
48 |
47 |
| rRNA (NCBI Nucleotide) |
4 |
4 |
4 |
4 |
4 |
4 |
| mRNA (RefSeq) |
308 |
307 |
307 |
297 |
320 |
325 |
| piRNA (NCBI Nucleotide) |
86 |
85 |
84 |
73 |
70 |
67 |
| Novel miRNA predicted | 46 | 57 | 55 | 38 | 39 | 42 |